View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4398_high_6 (Length: 356)
Name: NF4398_high_6
Description: NF4398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4398_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 18 - 344
Target Start/End: Original strand, 7044773 - 7045099
Alignment:
| Q |
18 |
atacggtacctcagacattataatccatggcatagctcccattcccaaagagaatgcaataaccatgacctgaaagaaattggaagtttataattattag |
117 |
Q |
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| T |
7044773 |
atacggtacctcagacattataatccatggcatagctcccattcccaaagagaatgcaataaccatgacctgaaagaaattggaagtttataattattag |
7044872 |
T |
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| Q |
118 |
atatatgtttgctaccaaaaacatcatttgtgtaataaatttgtatttgtatatgtacataccacaactccggccaccgataagaggctcaatatcccat |
217 |
Q |
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| T |
7044873 |
atatatgtttgctaccaaaaacatcatttgtgtaataaatttgcatttgtatatgtacataccacaactccggccaccgataagaggctcaatatcccat |
7044972 |
T |
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| Q |
218 |
ataaagaagaatctgctgatatataataatcctgagaacaaattcaacacaatatattatccatctaaaaaactgaaaacataaagaatttgctgatata |
317 |
Q |
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| T |
7044973 |
ataaagaagaatctgctgatatataataatcctgagaacaaattcaacacaatatattatccatctaaaaaaccgaaaacataaagaatttgctgatata |
7045072 |
T |
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| Q |
318 |
caatcctgtgataccttcaagtagaat |
344 |
Q |
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| T |
7045073 |
caatcctgtgataccttcaagtagaat |
7045099 |
T |
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