View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4398_high_8 (Length: 324)
Name: NF4398_high_8
Description: NF4398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4398_high_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 16 - 321
Target Start/End: Original strand, 44409621 - 44409922
Alignment:
| Q |
16 |
cagttggtgatgccaataatgcatgtgaaggttctatgaccgtagaagcatttgctggtagagacactgttcaagttccatatcaatctaagggtaaagg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44409621 |
cagttggtgatgccaataatgcatgtgaaggttctatgaccgtagaagcatttgctggtagagacactgttcaagttccatatcaatctaagggtaaagg |
44409720 |
T |
|
| Q |
116 |
agggtttgttagaggcaaacttcgttttaaggcatcgacaagacgtactaggattaggttcctaagtacattttacaccatgaagaatgataactctggt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44409721 |
agggtttgttagaggcaaacttcgttttaaggcatcgacaagacgtactaggattaggttcctaagtacattttacaccatgaagaatgataactctggt |
44409820 |
T |
|
| Q |
216 |
tctctttgtggacctgttattgatgatgtaaaattgcttagtgttcgttatcccaacaaccatacctaagtagtatatatgctgcaaatcaaaatgctac |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
44409821 |
tctctttgtggacctgttattgatgatgtaaaattgcttagtgttcgttatcccaacaaccatacctaagtag----tatgctgcaaatcaaaatgctac |
44409916 |
T |
|
| Q |
316 |
cttcat |
321 |
Q |
| |
|
|||||| |
|
|
| T |
44409917 |
cttcat |
44409922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 256
Target Start/End: Original strand, 2287502 - 2287543
Alignment:
| Q |
215 |
ttctctttgtggacctgttattgatgatgtaaaattgcttag |
256 |
Q |
| |
|
|||||||||||| ||||||||||||||||| || |||||||| |
|
|
| T |
2287502 |
ttctctttgtggtcctgttattgatgatgtcaagttgcttag |
2287543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University