View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4398_high_9 (Length: 285)
Name: NF4398_high_9
Description: NF4398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4398_high_9 |
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| [»] chr5 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 6 - 285
Target Start/End: Complemental strand, 9854105 - 9853826
Alignment:
| Q |
6 |
actccttttcatcaacactacttacattcttcaccaatgtccatgttagattatctgcaaccttgattggttttcctgacaacttctttagacatacgaa |
105 |
Q |
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||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||| ||| |
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| T |
9854105 |
actccttgtcatcaacactactcacattcttcaccaatgtccatgttaaattatctgcaaccttaattggttttcctaacaacttctttagacataagaa |
9854006 |
T |
|
| Q |
106 |
catgttcccacaaaccacactgcaaaaccaattctccatgtgattaaattcaattcctatagcctttacgcacccaaagtgatatttttgctcacattga |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |
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| T |
9854005 |
catgttcccacaaaccacactgcaaaaccaattctccatgtgattaaattcaattcctacagcctttacgcatccaaagtgatatttttgctcacattga |
9853906 |
T |
|
| Q |
206 |
acgcaaacaagaatattgttatccttgtgatctttacattcttgtttgcatttgggtcgataacatattttgcaacaaca |
285 |
Q |
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| T |
9853905 |
acacaaacaagaatattgttatccttgtgatctttacattcttgtttgcatttgggtcgatagcatattttgcaacaaca |
9853826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 6 - 285
Target Start/End: Original strand, 9819875 - 9820154
Alignment:
| Q |
6 |
actccttttcatcaacactacttacattcttcaccaatgtccatgttagattatctgcaaccttgattggttttcctgacaacttctttagacatacgaa |
105 |
Q |
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||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||| ||| |
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| T |
9819875 |
actccttgtcatcaacactactcacattcttcaccaatgtccatgttaaattatctgcaaccttaattggttttcctaacaacttctttagacataagaa |
9819974 |
T |
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| Q |
106 |
catgttcccacaaaccacactgcaaaaccaattctccatgtgattaaattcaattcctatagcctttacgcacccaaagtgatatttttgctcacattga |
205 |
Q |
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| T |
9819975 |
catgttcccacaaaccacactgcaaaaccaattctccatgtgattaaattcaattcctacagcctttacacatccaaagtgatatttttgctcacattga |
9820074 |
T |
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| Q |
206 |
acgcaaacaagaatattgttatccttgtgatctttacattcttgtttgcatttgggtcgataacatattttgcaacaaca |
285 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
9820075 |
acacaaacaagaatattgttatccttgtgatctttacattcttgtttgcatttgggtcgatagcatattttgcaacaaca |
9820154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 21 - 285
Target Start/End: Original strand, 44870755 - 44871037
Alignment:
| Q |
21 |
cactacttacattcttcaccaatgtccatgttagattatctgcaaccttgattggttttcctgacaacttctttagacatacgaacatgttcccacaaac |
120 |
Q |
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||||||| |||||||||| ||||||||| ||| ||||||||||||||| |||||||| || | | |||||||||||||| |||||||||||||||||| |
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| T |
44870755 |
cactactcacattcttcaacaatgtccaatttatattatctgcaaccttaattggtttccccaatagcttctttagacataagaacatgttcccacaaac |
44870854 |
T |
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| Q |
121 |
cacactgcaaaaccaat------------------tctccatgtgattaaattcaattcctatagcctttacgcacccaaagtgatatttttgctcacat |
202 |
Q |
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|||||||||||||||| |||| ||||| || || ||| || | ||| |||||| |||||||||||| |||||||||||||| |
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| T |
44870855 |
tacactgcaaaaccaattcttctttttaatattgctctctgtgtgactagatccaaatcttgtagtctttacacacccaaagtgaaatttttgctcacat |
44870954 |
T |
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| Q |
203 |
tgaacgcaaacaagaatattgttatccttgtgatctttacattcttgtttgcatttgggtcgataacatattttgcaacaaca |
285 |
Q |
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|| || || ||||||| |||||| || ||| |||| ||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
44870955 |
tgtacacatacaagaaaattgttttcattgccatctgcacattcttgtttgcatttgggtcgatagcatattttgcaacaaca |
44871037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 4e-38; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 24 - 285
Target Start/End: Complemental strand, 47523692 - 47523413
Alignment:
| Q |
24 |
tacttacattcttcaccaatgtccatgttagattatctgcaaccttgattggttttcctgacaacttctttagacatacgaacatgttcccacaaaccac |
123 |
Q |
| |
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|||| |||||||||| |||||||| ||||||||| ||||||| | |||||||| |||||||||||||||||||||| ||||||||| |||||||| || |
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| T |
47523692 |
tactcacattcttcaataatgtccaagttagattagctgcaactgttattggtttccctgacaacttctttagacataagaacatgttaccacaaactac |
47523593 |
T |
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| Q |
124 |
actgcaaaaccaat------------------tctccatgtgattaaattcaattcctatagcctttacgcacccaaagtgatatttttgctcacattga |
205 |
Q |
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|||||||||||||| |||| |||||| | || ||| ||||| ||||||||| |||||||| ||| | ||||| |||||||| |
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| T |
47523592 |
actgcaaaaccaattcttcttttcaccattgctctcaatgtgacttgatccaagtcctaaagcctttacacacccaaaatgaaacttttgtgcacattga |
47523493 |
T |
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| Q |
206 |
acgcaaacaagaatattgttatccttgtgatctttacattcttgtttgcatttgggtcgataacatattttgcaacaaca |
285 |
Q |
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|| ||||||||||||||| | || ||| |||| ||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
47523492 |
acacaaacaagaatattgctgtcattgccatctgcacattcttgcttgcatttgggtcgatagcatattttgcaacaaca |
47523413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 138 - 285
Target Start/End: Complemental strand, 47528908 - 47528761
Alignment:
| Q |
138 |
tctccatgtgattaaattcaattcctatagcctttacgcacccaaagtgatatttttgctcacattgaacgcaaacaagaatattgttatccttgtgatc |
237 |
Q |
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||||||||||| || ||||| |||| | |||||||| |||||||||||| |||| |||||||||||||| |||||||||||||||||||| ||| ||| |
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| T |
47528908 |
tctccatgtgactagattcatatcctgttgcctttacacacccaaagtgaaatttctgctcacattgaacacaaacaagaatattgttatcattggtatc |
47528809 |
T |
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| Q |
238 |
tttacattcttgtttgcatttgggtcgataacatattttgcaacaaca |
285 |
Q |
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| ||||||||||||| ||||| |||||| ||||||||||||||||||| |
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| T |
47528808 |
tgtacattcttgtttacatttaggtcgacaacatattttgcaacaaca |
47528761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 140
Target Start/End: Complemental strand, 47529050 - 47528924
Alignment:
| Q |
14 |
tcatcaacactacttacattcttcaccaatgtccatgttagattatctgcaaccttgattggttttcctgacaacttctttagacatacgaacatgttcc |
113 |
Q |
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|||||| ||||| | |||||||||| || |||||| |||||||| ||||||||||| |||||||| | | | |||||||||||||| |||| ||||| |
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| T |
47529050 |
tcatcatcactattcacattcttcaacagtgtccaagttagattgtctgcaaccttaattggtttccacaatagcttctttagacatatgaacctgttca |
47528951 |
T |
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| Q |
114 |
cacaaaccacactgcaaaaccaattct |
140 |
Q |
| |
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| ||||| | | ||||||||||||||| |
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| T |
47528950 |
cgcaaactatattgcaaaaccaattct |
47528924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 279
Target Start/End: Complemental strand, 21062203 - 21062100
Alignment:
| Q |
176 |
cacccaaagtgatatttttgctcacattgaacgcaaacaagaatattgttatccttgtgatctttacattcttgtttgcatttgggtcgataacatattt |
275 |
Q |
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|||||||| ||| ||||||||||||||||||| || |||||||||||||||| || || | ||| ||||||||||| || ||| |||||||||||| |
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| T |
21062203 |
cacccaaattgaaatttttgctcacattgaacacacgcaagaatattgttatcattaccatttgcacactcttgtttgcactttggttgataacatattt |
21062104 |
T |
|
| Q |
276 |
tgca |
279 |
Q |
| |
|
|||| |
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| T |
21062103 |
tgca |
21062100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 279
Target Start/End: Complemental strand, 21081596 - 21081493
Alignment:
| Q |
176 |
cacccaaagtgatatttttgctcacattgaacgcaaacaagaatattgttatccttgtgatctttacattcttgtttgcatttgggtcgataacatattt |
275 |
Q |
| |
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|||||||| ||| ||||||||||||||||||| || |||||||||||||||| || || | ||| ||||||||||| || ||| |||||||||||| |
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| T |
21081596 |
cacccaaattgaaatttttgctcacattgaacacacgcaagaatattgttatcattaccatttgcacactcttgtttgcactttggttgataacatattt |
21081497 |
T |
|
| Q |
276 |
tgca |
279 |
Q |
| |
|
|||| |
|
|
| T |
21081496 |
tgca |
21081493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 285
Target Start/End: Original strand, 21080663 - 21080790
Alignment:
| Q |
156 |
caattcctatagcctttacgcacccaaagtgatatttttgctcacattgaacgcaaacaagaatattgttatccttgtgatctttacattcttgtttgca |
255 |
Q |
| |
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|||||| |||||||||||| |||||||||||| | |||| | |||||||| | ||||||| ||| ||||| | || || | ||||||| |||| || |
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| T |
21080663 |
caattcatatagcctttacacacccaaagtgaaaatttt-cacacattgatcacaaacaa-aatgttgttttgatttccatatgcacattctggttttca |
21080760 |
T |
|
| Q |
256 |
tttgggtcgataacatattttgcaacaaca |
285 |
Q |
| |
|
||| |||||||| ||||||||||||||||| |
|
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| T |
21080761 |
tttaggtcgatagcatattttgcaacaaca |
21080790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 285
Target Start/End: Original strand, 21061353 - 21061397
Alignment:
| Q |
241 |
acattcttgtttgcatttgggtcgataacatattttgcaacaaca |
285 |
Q |
| |
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||||||| |||| ||||| |||||||| ||||||||||||||||| |
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| T |
21061353 |
acattctggttttcatttaggtcgatagcatattttgcaacaaca |
21061397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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