View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4398_low_1 (Length: 1047)
Name: NF4398_low_1
Description: NF4398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4398_low_1 |
 | |
|
| [»] scaffold0488 (1 HSPs) |
| | |
|
| [»] scaffold0050 (1 HSPs) |
| | |
|
| [»] scaffold0164 (1 HSPs) |
| | |
|
| [»] scaffold0186 (1 HSPs) |
| | |
|
| [»] scaffold0457 (1 HSPs) |
| | |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 4e-90; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 4e-90
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 4571063 - 4570867
Alignment:
| Q |
18 |
gtgtcttcttattgtcacctgttactatccttagtagcagagtgtgttttccattttatccttccttataagtggtctaaggctacttaggaagtgactt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4571063 |
gtgtcttcttattgtcacctgttactatccttagtagcagactttgttttccattttatccttccttagaagtggtctaaggctacttaggaagtgactt |
4570964 |
T |
|
| Q |
118 |
tgcttttctgtttttgttgtctaattgggtattggcttagtccccccaattttgtacttttccctctattcttttattgcaattttctagctttatc |
214 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
4570963 |
tgcttttctgtctttgttgtctaattgggtattggcttagtccccccaattttatacttttccctctatttttttattgtaattttctagctttatc |
4570867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 63 - 214
Target Start/End: Original strand, 36770325 - 36770476
Alignment:
| Q |
63 |
gttttccattttatccttccttataagtggtctaaggctacttaggaagtgactttgcttttctgtttttgttgtctaattgggtattggcttagtcccc |
162 |
Q |
| |
|
||||| ||| |||||| |||||| ||||||| |||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||| |
|
|
| T |
36770325 |
gtttttcatcttatccctccttagaagtggtttaaggctacttaggaagtgactttgcttttctgtcttgattgtctatttgggtattggcttagtcccc |
36770424 |
T |
|
| Q |
163 |
ccaattttgtacttttccctctattcttttattgcaattttctagctttatc |
214 |
Q |
| |
|
||||| |||||||||||||| ||||| ||||||||| ||||||||||||||| |
|
|
| T |
36770425 |
ccaatattgtacttttccctttattcgtttattgcatttttctagctttatc |
36770476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 80 - 214
Target Start/End: Original strand, 9746983 - 9747117
Alignment:
| Q |
80 |
tccttataagtggtctaaggctacttaggaagtgactttgcttttctgtttttgttgtctaattgggtattggcttagtccccccaattttgtacttttc |
179 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
9746983 |
tccttagaagtggtttaaggctacttaggaagtgactttgcttttctgtcttgattgtctttttgggtattggcttagtccccccaatattgtacttttc |
9747082 |
T |
|
| Q |
180 |
cctctattcttttattgcaattttctagctttatc |
214 |
Q |
| |
|
||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
9747083 |
cctttattcttttattgcatttttctagctttatc |
9747117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 145; Significance: 9e-76; HSPs: 14)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 9e-76
Query Start/End: Original strand, 611 - 970
Target Start/End: Complemental strand, 31028283 - 31027909
Alignment:
| Q |
611 |
taaacaatagtaaataatgtctccatttttgctggtattttgcatcacagttactgtcaaatttgaaaactatggatctgatgtactccgaaaacctgat |
710 |
Q |
| |
|
||||||||||||||||| || |||||||||| ||||||||| ||||||||| ||| | |||||||||||||||||||||||||||||| || |||| || |
|
|
| T |
31028283 |
taaacaatagtaaataacgtttccatttttgttggtatttttcatcacagtatctgcccaatttgaaaactatggatctgatgtactccaaacacctaat |
31028184 |
T |
|
| Q |
711 |
caagatgccaaattttggagaggttccgaatcttgaa---------------ggacgtgtaaatcttgtgcagattgatccatctatttgtcttctggga |
795 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||| || |||||||||||| |||||||| || |
|
|
| T |
31028183 |
caagatgccaaattttggagaggttccaaatcttgagcggctgaatctcgacggatgtgtaaatcttgtgcaaatagatccatctattggtcttctgaga |
31028084 |
T |
|
| Q |
796 |
aagcatgttttcttgatgttgaaaaattgcaataatctaagaagcaaaccaaaaaacatgtctggtctcagctctcttaaatatctaaatttttccggtt |
895 |
Q |
| |
|
|||| ||| ||||||| |||||||||||||| ||||||| ||||| ||| || ||||| | |||||||| ||||||||||||||||||| ||||| | | |
|
|
| T |
31028083 |
aagcttgtattcttgaacttgaaaaattgcaaaaatctaataagcatacctaacaacatatttggtctcacctctcttaaatatctaaatctttcctggt |
31027984 |
T |
|
| Q |
896 |
gttgtaaagcatttaacgatccaaagcattagaagaaacttgattcgagtgaaattgtattgcattcccaatcaa |
970 |
Q |
| |
|
||| |||| |||| | || ||| ||||| ||| |||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
31027983 |
gttccaaagtgtttaccaatacaaggcatttgaataaacttgattcgagtgaaattgtattacattcccagtcaa |
31027909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 34 - 214
Target Start/End: Original strand, 44775749 - 44775928
Alignment:
| Q |
34 |
acctgttactatccttagtagcagagtgtgttttccattttatccttccttataagtggtctaaggctacttaggaagtgactttgcttttctgtttttg |
133 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||| | |||| |
|
|
| T |
44775749 |
acctgttactatccttagtagcagagtgtgttttccattttatccttcctt-gaagtggtttaaggctactttggaagtgactttgcttttttcactttg |
44775847 |
T |
|
| Q |
134 |
ttgtctaattgggtattggcttagt-ccccccaattttgtacttttccctctattcttttattgcaattttctagctttatc |
214 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||| |||||||||||||| |||||||||||||| ||||| |||||||||| |
|
|
| T |
44775848 |
ttgtctaattgagtattggcttagtcccccccaatattgtacttttccctttattcttttattgc-attttttagctttatc |
44775928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 37 - 213
Target Start/End: Original strand, 33471800 - 33471975
Alignment:
| Q |
37 |
tgttactatccttagtagcagagtgtgttttccattttatccttccttataagtggtctaaggctacttaggaagtgactttgcttttctgtttttgttg |
136 |
Q |
| |
|
|||||||||||| | |||||| ||||||||||||| |||||| ||||| ||||| | ||||||||||||||||||| || |||||| |||| | | ||| |
|
|
| T |
33471800 |
tgttactatcctcaatagcagggtgtgttttccatcttatcccaccttagaagtgatttaaggctacttaggaagtgtctctgctttactgtctctattg |
33471899 |
T |
|
| Q |
137 |
tctaattgggtattggcttagtccccccaattttgtacttttccctctattcttttattgcaattttctagctttat |
213 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||| ||||||| ||| ||||||||||||||| |||||||||||||| |
|
|
| T |
33471900 |
tctaattgagtattggcttagt-cccccaattttatactttttcctttattcttttattgcatttttctagctttat |
33471975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 755 - 970
Target Start/End: Complemental strand, 31157763 - 31157548
Alignment:
| Q |
755 |
taaatcttgtgcagattgatccatctatttgtcttctgggaaagcatgttttcttgatgttgaaaaattgcaataatctaagaagcaaaccaaaaaacat |
854 |
Q |
| |
|
|||| |||||||||||||||||||| ||| | |||| |||||| ||||||| ||| |||||| ||||||| |||||| ||||| ||| || ||||| |
|
|
| T |
31157763 |
taaagcttgtgcagattgatccatcaattggggttctaagaaagcttgttttcatgaaattgaaagattgcaaaaatctagtaagcataccgaacaacat |
31157664 |
T |
|
| Q |
855 |
gtctggtctcagctctcttaaatatctaaatttttccggttgttgtaaagcatttaacgatccaaagcattagaagaaacttgattcgagtgaaattgta |
954 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |||| |||| |||||| |||||| ||||| ||||||| ||||||||||||| ||| || |
|
|
| T |
31157663 |
acttggtctcagctctcttaaatatctaaatctttccgggtgttccaaagtgtttaacaatccaaggcatttgaagaaatttgattcgagtgatatttta |
31157564 |
T |
|
| Q |
955 |
ttgcattcccaatcaa |
970 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
31157563 |
tttcattcccaatcaa |
31157548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 861 - 970
Target Start/End: Complemental strand, 31017997 - 31017888
Alignment:
| Q |
861 |
tctcagctctcttaaatatctaaatttttccggttgttgtaaagcatttaacgatccaaagcattagaagaaacttgattcgagtgaaattgtattgcat |
960 |
Q |
| |
|
||||| ||||||||||||||||||| |||| || |||| |||| |||||| |||||||||||| ||||||||||||||||||||||| |||| | ||| |
|
|
| T |
31017997 |
tctcacctctcttaaatatctaaatctttctgggtgttccaaagtgtttaactatccaaagcatttgaagaaacttgattcgagtgaaactgtactacat |
31017898 |
T |
|
| Q |
961 |
tcccaatcaa |
970 |
Q |
| |
|
|||||||||| |
|
|
| T |
31017897 |
tcccaatcaa |
31017888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 452 - 551
Target Start/End: Complemental strand, 31018627 - 31018528
Alignment:
| Q |
452 |
agttttcagcccaaccaacttgttgaacttcatttgaggtatagcagcatcgaacaaatatgggaaggggaaaaggtactataaatcatgaatttaattt |
551 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||| |||| | ||||||||| |||| ||| | ||||||| |
|
|
| T |
31018627 |
agttttcagcccaaccaacttgttgaacttcatttgagctatagcagcatcaaacaactatggaaaggcaagaaggtactagaaattatgtacttaattt |
31018528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 611 - 746
Target Start/End: Complemental strand, 31018189 - 31018055
Alignment:
| Q |
611 |
taaacaatagtaaataatgtctccatttttgctggtattttgcatcacagttactgtcaaatttgaaaactatggatctgatgtactccgaaaacctgat |
710 |
Q |
| |
|
|||||||||||||||||| |||||||| | | |||| ||| |||||||||| || | ||||||| || ||||||||||||| ||||| |||||| || |
|
|
| T |
31018189 |
taaacaatagtaaataatatctccattct-gttggtctttggcatcacagtatctacccaatttgagaattatggatctgatgcactccagaaacctaat |
31018091 |
T |
|
| Q |
711 |
caagatgccaaattttggagaggttccgaatcttga |
746 |
Q |
| |
|
|||| ||||| |||||||||||||||| |||||||| |
|
|
| T |
31018090 |
caagctgccagattttggagaggttccaaatcttga |
31018055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 451 - 551
Target Start/End: Complemental strand, 31028511 - 31028411
Alignment:
| Q |
451 |
aagttttcagcccaaccaacttgttgaacttcatttgaggtatagcagcatcgaacaaatatgggaaggggaaaaggtactataaatcatgaatttaatt |
550 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||| || |||||||||| ||||| |||||||||| | |||||||||||||| ||| | |||||| |
|
|
| T |
31028511 |
aagttttcagcccaaccagcttgttgaactttatttgtggcgtagcagcatccaacaactatgggaaggcaagaaggtactataaattatgtacttaatt |
31028412 |
T |
|
| Q |
551 |
t |
551 |
Q |
| |
|
| |
|
|
| T |
31028411 |
t |
31028411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 214
Target Start/End: Original strand, 39317956 - 39318030
Alignment:
| Q |
139 |
taattgggtattggcttagtccccccaattttgtacttttccctctattcttttattgcaattttctagctttatc |
214 |
Q |
| |
|
||||||||| ||||| ||||||||||||| || ||||||||||| | ||||||||||||| ||||||||||||||| |
|
|
| T |
39317956 |
taattgggttttggcctagtccccccaatattatacttttccct-ttttcttttattgcatttttctagctttatc |
39318030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 327 - 409
Target Start/End: Complemental strand, 31026741 - 31026660
Alignment:
| Q |
327 |
atttgttggtaacaaggtgagaagaaatacttactgttaaatttttccaacaaaaagactaagcaatctcatccctagaatac |
409 |
Q |
| |
|
|||||| |||||||||||||||||||| | |||||||| |||||||| |||||||||| |||||| || |||||||||||| |
|
|
| T |
31026741 |
atttgtcggtaacaaggtgagaagaaagaattactgtt-aatttttcaaacaaaaagagctagcaatttcgtccctagaatac |
31026660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 829 - 949
Target Start/End: Complemental strand, 31032613 - 31032493
Alignment:
| Q |
829 |
aatctaagaagcaaaccaaaaaacatgtctggtctcagctctcttaaatatctaaatttttccggttgttgtaaagcatttaacgatccaaagcattaga |
928 |
Q |
| |
|
||||||| ||||| ||| || ||||| | |||||||| ||||||||||||||||||| ||||||| |||| |||| |||||| |||||| ||| | || |
|
|
| T |
31032613 |
aatctaataagcatacccaacaacatatttggtctcacctctcttaaatatctaaatctttccgggtgttccaaagtgtttaacaatccaatgcaattga |
31032514 |
T |
|
| Q |
929 |
agaaacttgattcgagtgaaa |
949 |
Q |
| |
|
|||| || |||| ||||||| |
|
|
| T |
31032513 |
agaacctcaattcaagtgaaa |
31032493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 739 - 879
Target Start/End: Original strand, 31491325 - 31491465
Alignment:
| Q |
739 |
aatcttgaaggacgtgtaaatcttgtgcagattgatccatctatttgtcttctgggaaagcatgttttcttgatgttgaaaaattgcaataatctaagaa |
838 |
Q |
| |
|
|||||||||||| |||||| |||||||||||| || |||||||| | ||||| || ||| ||||||||||| ||||| ||||| || ||||| | | |
|
|
| T |
31491325 |
aatcttgaaggatgtgtaagccttgtgcagattaattcatctattggccttctaagagagcttgttttcttgaatttgaagaattgtaaaaatcttatat |
31491424 |
T |
|
| Q |
839 |
gcaaaccaaaaaacatgtctggtctcagctctcttaaatat |
879 |
Q |
| |
|
||| ||| || | || |||||||||| ||||||||||||| |
|
|
| T |
31491425 |
gcatacccaatgaaatatctggtctcacctctcttaaatat |
31491465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 746 - 912
Target Start/End: Complemental strand, 31526986 - 31526820
Alignment:
| Q |
746 |
aaggacgtgtaaatcttgtgcagattgatccatctatttgtcttctgggaaagcatgttttcttgatgttgaaaaattgcaataatctaagaagcaaacc |
845 |
Q |
| |
|
||||| ||||||| |||| |||||| |||||||||||| || |||| |||| | ||||| ||||| ||| || ||||||| |||||| || || ||| |
|
|
| T |
31526986 |
aaggatgtgtaaaacttgagcagatagatccatctattagtgttctaagaaaacttgtttacttgaatttggaagattgcaaaaatctagtaaccatacc |
31526887 |
T |
|
| Q |
846 |
aaaaaacatgtctggtctcagctctcttaaatatctaaatttttccggttgttgtaaagcatttaac |
912 |
Q |
| |
|
|| || ||| |||||||| ||||||| | ||||||||| |||| || |||| || ||||||||| |
|
|
| T |
31526886 |
gaatgacttgtttggtctcacctctcttgagtatctaaatctttctggatgttacaaggcatttaac |
31526820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 428 - 477
Target Start/End: Complemental strand, 31527292 - 31527243
Alignment:
| Q |
428 |
tatcctttcgtgcatttggcatcaagttttcagcccaaccaacttgttga |
477 |
Q |
| |
|
||||||||| || ||||| ||||||||||||| ||| ||||||||||||| |
|
|
| T |
31527292 |
tatcctttcatgtatttgccatcaagttttcaaccctaccaacttgttga |
31527243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 2e-49; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 37 - 213
Target Start/End: Original strand, 11776264 - 11776440
Alignment:
| Q |
37 |
tgttactatccttagtagcagagtgtgttttccattttatccttccttataagtggtctaaggctacttaggaagtgactttgcttttctgtttttgttg |
136 |
Q |
| |
|
|||||| | ||| |||||||| ||||||||||||| |||||| ||||| ||||| | ||||||||||||||||||| || |||||| |||| | | ||| |
|
|
| T |
11776264 |
tgttaccaccctcagtagcagggtgtgttttccatcttatcccaccttagaagtgatttaaggctacttaggaagtgtctctgctttactgtctctattg |
11776363 |
T |
|
| Q |
137 |
tctaattgggtattggcttagtccccccaattttgtacttttccctctattcttttattgcaattttctagctttat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||| |
|
|
| T |
11776364 |
tctaattgggtattggcttagtccccccaattttgtactttttcctttattcttttattgcatttttctagctttat |
11776440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 50 - 213
Target Start/End: Original strand, 9743151 - 9743318
Alignment:
| Q |
50 |
agtagcagagtgtgttttccattttatccttccttataagtggtctaaggctacttaggaagtgactttgcttttctg---tttttgttgtctaattggg |
146 |
Q |
| |
|
|||||||| ||||||||| ||| |||| | |||||| ||||||| ||||| |||| |||||||||||||||||| ||| ||||| ||||| ||||||| |
|
|
| T |
9743151 |
agtagcagggtgtgtttttcatcttatgcctccttagaagtggtttaaggttactaaggaagtgactttgctttactgttcttttttttgtcgaattggg |
9743250 |
T |
|
| Q |
147 |
tattggcttagt-ccccccaattttgtacttttccctctattcttttattgcaattttctagctttat |
213 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||| | ||||||||||| | |||||||||||||| |
|
|
| T |
9743251 |
tattggcttagtcccccccaattttgtactgttcccttttttcttttattgaatttttctagctttat |
9743318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 34 - 214
Target Start/End: Original strand, 28091789 - 28091962
Alignment:
| Q |
34 |
acctgttactatccttagtagcagagtgtgttttccat-tttatccttccttataagtggtctaaggctacttaggaagtgactttgcttttctgttttt |
132 |
Q |
| |
|
|||||||| || |||||||||||| ||||||||| | | ||| || ||| ||| |||||| || |||||||||||||||||||||||||| | | || |
|
|
| T |
28091789 |
acctgttattacccttagtagcagggtgtgtttttcctgtttgtcattctttagaagtgggttatggctacttaggaagtgactttgctttattatcctt |
28091888 |
T |
|
| Q |
133 |
gttgtctaattgggtattggcttagtccccccaattttgtacttttccctctattcttttattgcaattttctagctttatc |
214 |
Q |
| |
|
||||||||||||| |||||||||| |||||||| |||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
28091889 |
tttgtctaattgggctttggcttagt-cccccaatattgtacttttcc-------cttttattgcatttttctagctttatc |
28091962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 13528940 - 13528998
Alignment:
| Q |
139 |
taattgggtattggcttagtccccccaattttgtacttttccctctattcttttattgc |
197 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||| |
|
|
| T |
13528940 |
taattgggtattggcttagtcccttcaatattgtacttttccctttattcttttattgc |
13528998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 203
Target Start/End: Complemental strand, 13481667 - 13481603
Alignment:
| Q |
139 |
taattgggtattggcttagtccccccaattttgtacttttccctctattcttttattgcaatttt |
203 |
Q |
| |
|
|||||| | |||||||||||| ||||||| |||||||||||||| ||||||||||||||| |||| |
|
|
| T |
13481667 |
taattgagcattggcttagtcaccccaatattgtacttttccctttattcttttattgcattttt |
13481603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 94; Significance: 2e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 37 - 214
Target Start/End: Original strand, 9264661 - 9264838
Alignment:
| Q |
37 |
tgttactatccttagtagcagagtgtgttttccattttatccttccttataagtggtctaaggctacttaggaagtgactttgcttttctgtttttgttg |
136 |
Q |
| |
|
|||||||| ||| |||||||| ||||||||||||| |||||| ||||| |||| | ||||||||||||||||||| || ||||| |||| | | ||| |
|
|
| T |
9264661 |
tgttactaccctcagtagcagggtgtgttttccatcttatcccaccttaggagtgatttaaggctacttaggaagtgtctcagctttactgtctctattg |
9264760 |
T |
|
| Q |
137 |
tctaattgggtattggcttagtccccccaattttgtacttttccctctattcttttattgcaattttctagctttatc |
214 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
9264761 |
tctaattggatattggcttagtccccccaattttgtactttttcctttattcttttattgcatttttctagctttatc |
9264838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 2e-36; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 61 - 214
Target Start/End: Original strand, 24623064 - 24623218
Alignment:
| Q |
61 |
gtgttttccattttatccttccttataagtggtctaaggctacttaggaagtgactttgcttttctgtttttgttgtctaattgggtattggctta-gtc |
159 |
Q |
| |
|
||||||| ||| |||| | | |||| ||||||| ||||||||||||||||||||||||||||| |||| ||| |||||||||||||| |||||||| ||| |
|
|
| T |
24623064 |
gtgtttttcatcttatgccttcttagaagtggtttaaggctacttaggaagtgactttgctttactgtcttttttgtctaattgggttttggcttaggtc |
24623163 |
T |
|
| Q |
160 |
cccccaattttgtacttttccctctattcttttattgcaattttctagctttatc |
214 |
Q |
| |
|
||||||||||| |||| |||||| | ||||||||||| | ||||||||||||||| |
|
|
| T |
24623164 |
cccccaattttatactgttcccttttttcttttattgaacttttctagctttatc |
24623218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 139 - 214
Target Start/End: Complemental strand, 21735066 - 21734993
Alignment:
| Q |
139 |
taattgggtattggcttagtccccccaattttgtacttttccctctattcttttattgcaattttctagctttatc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||| |||||||||||||||| |
|
|
| T |
21735066 |
taattgggtattggcttagtccccccaattttgtactttt-cctttattcttttaatgc-attttctagctttatc |
21734993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 97 - 214
Target Start/End: Original strand, 8034370 - 8034490
Alignment:
| Q |
97 |
aggctacttaggaagtgactttgcttt---tctgtttttgt-tgtctaattgggtattggcttagtcccccc-aattttgtacttttccctctattcttt |
191 |
Q |
| |
|
||||||||||||||||||||| ||||| |||| | || | ||| ||||||||| ||||| |||||||||| ||| |||||||||||| | | ||||| |
|
|
| T |
8034370 |
aggctacttaggaagtgacttagctttacatctggtcttttatgtttaattgggttttggcctagtcccccccaatattgtacttttcctttt--tcttt |
8034467 |
T |
|
| Q |
192 |
tattgcaattttctagctttatc |
214 |
Q |
| |
|
||||||| ||||||||||||||| |
|
|
| T |
8034468 |
tattgcatttttctagctttatc |
8034490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 134 - 213
Target Start/End: Original strand, 706481 - 706560
Alignment:
| Q |
134 |
ttgtctaattgggtattggcttagtccccccaattttgtacttttccctctattcttttattgcaattttctagctttat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||| |||||||||||||| |
|
|
| T |
706481 |
ttgtctaattgggtattggcttagtccccccaatattgtactttttcctttattcttttattgcatttttctagctttat |
706560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 7e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 126 - 211
Target Start/End: Complemental strand, 5180203 - 5180119
Alignment:
| Q |
126 |
tgtttttgttgtctaattgggtattggcttagtccccccaattttgtacttttccctctattcttttattgcaattttctagcttt |
211 |
Q |
| |
|
||||| ||| |||||||||||| ||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5180203 |
tgtttgtgtagtctaattgggttttggcttagtccccc-aatattgtacttttccctttattcttttattgcaattttctagcttt |
5180119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 213
Target Start/End: Original strand, 38140296 - 38140368
Alignment:
| Q |
139 |
taattgggtattggcttagtccccccaattttgtacttttccctctattcttttattgcaattttctagctttat |
213 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||| | | || ||||||||||||| | ||||||||||| |
|
|
| T |
38140296 |
taattgggtattggcctagtccccccaatcttgtacttcttc--cttttcttttattgcattcctctagctttat |
38140368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0488 (Bit Score: 53; Significance: 7e-21; HSPs: 1)
Name: scaffold0488
Description:
Target: scaffold0488; HSP #1
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 97 - 214
Target Start/End: Original strand, 4687 - 4806
Alignment:
| Q |
97 |
aggctacttaggaagtgactttgcttttctgtt----tttgttgtctaattgggtattggcttagtccccccaattttgtacttttccctctattctttt |
192 |
Q |
| |
|
||||||||||||||||| |||||||||||| || ||| ||| |||||||||||||||||||| ||||||||||||||||||| ||| |||||||| |
|
|
| T |
4687 |
aggctacttaggaagtgtctttgcttttcttttggtcttttatgtttaattgggtattggcttagt-cccccaattttgtactttt-cctttattcttta |
4784 |
T |
|
| Q |
193 |
attgcaattttctagctttatc |
214 |
Q |
| |
|
| |||| ||||||||||||||| |
|
|
| T |
4785 |
aatgcatttttctagctttatc |
4806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0050 (Bit Score: 53; Significance: 7e-21; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 97 - 214
Target Start/End: Original strand, 68440 - 68559
Alignment:
| Q |
97 |
aggctacttaggaagtgactttgcttttct----gtttttgttgtctaattgggtattggcttagtccccccaattttgtacttttccctctattctttt |
192 |
Q |
| |
|
||||||||| ||||||| |||||||||||| || ||| ||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
68440 |
aggctacttcggaagtgtctttgcttttcttatggtcttttatgtttaattgggtattggcttagtccccccaattttgtactttt-cctttattctttt |
68538 |
T |
|
| Q |
193 |
attgcaattttctagctttatc |
214 |
Q |
| |
|
| ||| |||||||| ||||||| |
|
|
| T |
68539 |
aatgc-attttctaactttatc |
68559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164 (Bit Score: 52; Significance: 3e-20; HSPs: 1)
Name: scaffold0164
Description:
Target: scaffold0164; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 97 - 213
Target Start/End: Original strand, 11924 - 12043
Alignment:
| Q |
97 |
aggctacttaggaagtgactttgcttttct----gtttttgttgtctaattgggtattggcttagtccccccaattttgtacttttccctctattctttt |
192 |
Q |
| |
|
||||||||||||||||| |||||||||||| || ||| ||| |||||| |||||||||| |||||| ||||||||||||||| ||| ||||||||| |
|
|
| T |
11924 |
aggctacttaggaagtgtctttgcttttcttatggtcttttatgtttaattgagtattggcttcgtcccctcaattttgtactttt-cctttattctttt |
12022 |
T |
|
| Q |
193 |
attgcaattttctagctttat |
213 |
Q |
| |
|
| |||| |||||||||||||| |
|
|
| T |
12023 |
aatgcatttttctagctttat |
12043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0186 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: scaffold0186
Description:
Target: scaffold0186; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 97 - 214
Target Start/End: Original strand, 31107 - 31227
Alignment:
| Q |
97 |
aggctacttaggaagtgactttgcttttct----gtttttgttgtctaattgggtattggcttagtccccccaattttgtacttttccctctattctttt |
192 |
Q |
| |
|
|||||| |||||||||| |||||||||||| || ||| ||| ||||||||||||| |||| ||||||||||||||||||||| ||| | ||||| | |
|
|
| T |
31107 |
aggctatttaggaagtgtctttgcttttcttatggtcttttatgtttaattgggtattgccttaatccccccaattttgtactttt-ccttttttcttct |
31205 |
T |
|
| Q |
193 |
attgcaattttctagctttatc |
214 |
Q |
| |
|
| |||| ||||||||||||||| |
|
|
| T |
31206 |
aatgcatttttctagctttatc |
31227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0457 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0457
Description:
Target: scaffold0457; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 213
Target Start/End: Complemental strand, 8828 - 8712
Alignment:
| Q |
99 |
gctacttaggaagtgactttgcttt---tctgtttttgttgtctaattgggtattggcttagtccccccaattttgtacttttccctctattcttttatt |
195 |
Q |
| |
|
||||||||||||||||||||||||| |||| | || |||| ||||||||| ||||| ||||||||| ||| ||||||||||| || | ||||||||| |
|
|
| T |
8828 |
gctacttaggaagtgactttgctttacatctggtctttttgtttaattgggttttggcctagtccccc-aatattgtacttttcacttttctcttttatt |
8730 |
T |
|
| Q |
196 |
gcaattttctagctttat |
213 |
Q |
| |
|
||| |||| ||||||||| |
|
|
| T |
8729 |
gcatttttttagctttat |
8712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 756 - 932
Target Start/End: Complemental strand, 33272355 - 33272179
Alignment:
| Q |
756 |
aaatcttgtgcagattgatccatctatttgtcttctgggaaagcatgttttcttgatgttgaaaaattgcaataatctaagaagcaaaccaaaaaacatg |
855 |
Q |
| |
|
|||||||||| || | |||||||||||| | ||||| |||||| ||||| ||||| || ||||||||||| |||||| ||||| ||| || ||||| |
|
|
| T |
33272355 |
aaatcttgtggagttggatccatctattggacttctaagaaagcttgtttacttgaatttaaaaaattgcaaaaatctagtaagcatacccaacaacata |
33272256 |
T |
|
| Q |
856 |
tctggtctcagctctcttaaatatctaaatttttccggttgttgtaaagcatttaacgatccaaagcattagaagaa |
932 |
Q |
| |
|
| || ||| |||||||| || |||||||| | ||||||| ||||| |||||| |||||| ||||| |||||| |
|
|
| T |
33272255 |
tttgatctttgctctcttgaagatctaaatatgcgtggttgttctaaagtgtttaacaatccaatgcatttgaagaa |
33272179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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