View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4398_low_3 (Length: 555)
Name: NF4398_low_3
Description: NF4398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4398_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 17 - 545
Target Start/End: Original strand, 23289523 - 23290063
Alignment:
| Q |
17 |
atttatatctgcaaaccatttaagaaaacatcta---atctactaattaaatgcaaacaaaatgctaaggataaggcaagtacaaacggcccgacaaagt |
113 |
Q |
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| T |
23289523 |
atttatatctgcaaaccatttaagaaaacatctactaatctactaattaaatgcaaacaaaatgctaaggataaggcaagtacaaacggcccgacaaagt |
23289622 |
T |
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| Q |
114 |
aaaaccaannnnnnngg--gaagtaacgtgtggccaacttaatgtttgtagagaagggacaactttggcaacttgaaagatgctaggtggctcacattaa |
211 |
Q |
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| T |
23289623 |
aacaccaatttttttttctgaagtaacgtgtggccaactaaatgtttgtagagaagggacaactttggcaacttgaaagatgctaggtggctctcattaa |
23289722 |
T |
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| Q |
212 |
ttaccaaagttgtggtcgtctcattaagattagatggttttgttagtttga--------attttaaagtaaaaattatatatgtttttattgaaacgttt |
303 |
Q |
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| T |
23289723 |
ttcccaaggttgtggtcttctgatcaagattagatggttttgttagtttgattttttaaattttaaagtaaaaattatatatgctttttttgaaacgttt |
23289822 |
T |
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| Q |
304 |
aactaagatcggacaatcaacgttgttgtgattgcgtgatcagttgtgatttgacaacacaatttaataatgnnnnnnnaagtatatagttttaatttta |
403 |
Q |
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| T |
23289823 |
aactaagatcggacaatcaacgctgttgtgattacgtgatcagttgtgatttgacaacacaatttaacaaagtttttctaagtatatagttttaatttta |
23289922 |
T |
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| Q |
404 |
tggttgacgacagttttgacccccaaagtatcacaaatttccgattttgatcccctaaaaaactttcattttttagaaaatgttttcactctgttgagag |
503 |
Q |
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| T |
23289923 |
tggttgacgacagttttgaccccgaa-gtatcacaaactttcaattttgattccctaaaaaactttcattttttagaaaatgttttcacgccgttgagag |
23290021 |
T |
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| Q |
504 |
agaaaaacaacatagagagtgaaatgcgatgcttgatgatgt |
545 |
Q |
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| T |
23290022 |
agaaaaacaacatagaaagtgaaatgcgatacttgatgatgt |
23290063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 19 - 228
Target Start/End: Complemental strand, 23390169 - 23389957
Alignment:
| Q |
19 |
ttatatctgcaaaccatttaagaaaacat---ctaatctactaattaaatgcaaacaaaatgctaaggataaggcaagtacaaacggcccgacaaagtaa |
115 |
Q |
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||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23390169 |
ttatatctgcaaagcatttcagaaaacatatactaatctactaattaaatgcaaacaaaatgctaaggataaggcaagtacaaacggcccgacaaagtaa |
23390070 |
T |
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| Q |
116 |
aaccaannnnnnngggaagtaacgtgtggccaacttaatgtttgtagagaagggacaactttggcaacttgaaagatgctaggtggctcacattaattac |
215 |
Q |
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| T |
23390069 |
caccaatttttttccgaagtaacgtgtggccaacttaatgtttgtagagaagggacaactttggcaacttgaaagatgctaggtggctctcattaattcc |
23389970 |
T |
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| Q |
216 |
caaagttgtggtc |
228 |
Q |
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||| ||||||||| |
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| T |
23389969 |
caaggttgtggtc |
23389957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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