View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4398_low_7 (Length: 333)
Name: NF4398_low_7
Description: NF4398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4398_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 10776668 - 10776615
Alignment:
| Q |
29 |
taattgatcgtaattatgttcatctttcttacttgagcatgattcctccattaa |
82 |
Q |
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| T |
10776668 |
taattgatcgtaattatgttcatctttcttacttgagcatgattcctccattaa |
10776615 |
T |
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Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 188 - 290
Target Start/End: Complemental strand, 10776148 - 10776043
Alignment:
| Q |
188 |
caatccaatttcatgaattgggggttggattttgtatgttgtattttc---annnnnnnnnncagggttcgatttgtataagaaattaataagagtgtta |
284 |
Q |
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| T |
10776148 |
caatccaatttcatgaattgggggttggattttgtatattgtattttcattatttttttttgcaggtttcgatttgtataagaaattaataaaagtgtta |
10776049 |
T |
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| Q |
285 |
aaaata |
290 |
Q |
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|||||| |
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| T |
10776048 |
aaaata |
10776043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 149 - 197
Target Start/End: Complemental strand, 10776548 - 10776500
Alignment:
| Q |
149 |
catgaatcctccatgttttgttttgtcctctgttgaattcaatccaatt |
197 |
Q |
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| T |
10776548 |
catgaatcctccatgttttgttttgtcctccgttgaattaaatccaatt |
10776500 |
T |
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