View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4398_low_9 (Length: 302)
Name: NF4398_low_9
Description: NF4398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4398_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 258298 - 258058
Alignment:
| Q |
1 |
aagtctttacataacatttaacaatgctgtgctacaaattaaataagcagtaaaaattacaatttttctatctccccttgcttgttctagcgtttggttc |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
258298 |
aagtctttacataacatttaataatgctgtgctacaaattaaataagcagtaaaaattacaatttttctatctccccttgcttgttctagcgtttggttc |
258199 |
T |
|
| Q |
101 |
caagattctttggtagtaataagttgcacatttccagaagcaaattccacatgctgaacagaatcatcatcttttgtttgggactgagactacaaacatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
258198 |
caagattctttggtagtaataagttgcacatttccagaagcaaattccacatgctgaacagaatcatcatcttttgtttgggactgagactgcaaacatt |
258099 |
T |
|
| Q |
201 |
agaaatatgaaaatttcagtcaatcaaattattgatgaaaa |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
258098 |
agaaatatgaaaatttcagtcaatcaaattattgatgaaaa |
258058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 657623 - 657863
Alignment:
| Q |
1 |
aagtctttacataacatttaacaatgctgtgctacaaattaaataagcagtaaaaattacaatttttctatctccccttgcttgttctagcgtttggttc |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
657623 |
aagtctttacataacatttaataatgctgtgctacaaattaaataagcagtaaaaattacaatttttctatctccccttgcttgttctagcgtttggttc |
657722 |
T |
|
| Q |
101 |
caagattctttggtagtaataagttgcacatttccagaagcaaattccacatgctgaacagaatcatcatcttttgtttgggactgagactacaaacatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
657723 |
caagattctttggtagtaataagttgcacatttccagaagcaaattccacatgctgaacagaatcatcatcttttgtttgggactgagactgcaaacatt |
657822 |
T |
|
| Q |
201 |
agaaatatgaaaatttcagtcaatcaaattattgatgaaaa |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
657823 |
agaaatatgaaaatttcagtcaatcaaattattgatgaaaa |
657863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 843358 - 843598
Alignment:
| Q |
1 |
aagtctttacataacatttaacaatgctgtgctacaaattaaataagcagtaaaaattacaatttttctatctccccttgcttgttctagcgtttggttc |
100 |
Q |
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|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
843358 |
aagtctttacataacatttaataatgctgtgctacaaattaaataagcagtaaaaattacaatttttctatctccccttgcttgttctagcgtttggttc |
843457 |
T |
|
| Q |
101 |
caagattctttggtagtaataagttgcacatttccagaagcaaattccacatgctgaacagaatcatcatcttttgtttgggactgagactacaaacatt |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
843458 |
caagattctttggtagtaataagttgcacatttccagaagcaaattccacatgctgaacagaatcatcatcttttgtttgggactgagactgcaaacatt |
843557 |
T |
|
| Q |
201 |
agaaatatgaaaatttcagtcaatcaaattattgatgaaaa |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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| T |
843558 |
agaaatatgaaaatttcagtcaatcaaattattgatgaaaa |
843598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 283
Target Start/End: Original strand, 257203 - 257235
Alignment:
| Q |
251 |
cttattgggtcatcaaattaattaggctaagag |
283 |
Q |
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|
||||||||||||||| ||||||||||||||||| |
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| T |
257203 |
cttattgggtcatcacattaattaggctaagag |
257235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 283
Target Start/End: Complemental strand, 658717 - 658685
Alignment:
| Q |
251 |
cttattgggtcatcaaattaattaggctaagag |
283 |
Q |
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||||||||||||||| ||||||||||||||||| |
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| T |
658717 |
cttattgggtcatcacattaattaggctaagag |
658685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 283
Target Start/End: Complemental strand, 844453 - 844421
Alignment:
| Q |
251 |
cttattgggtcatcaaattaattaggctaagag |
283 |
Q |
| |
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||||||||||||||| ||||||||||||||||| |
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|
| T |
844453 |
cttattgggtcatcacattaattaggctaagag |
844421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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