View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4399-Insertion-1 (Length: 971)

Name: NF4399-Insertion-1
Description: NF4399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4399-Insertion-1
NF4399-Insertion-1
[»] chr1 (12 HSPs)
chr1 (8-330)||(30341096-30341416)
chr1 (656-960)||(30340252-30340561)
chr1 (501-627)||(30340591-30340716)
chr1 (396-500)||(30340924-30341028)
chr1 (440-499)||(30320759-30320818)
chr1 (441-499)||(23058067-23058125)
chr1 (441-496)||(23057698-23057753)
chr1 (441-496)||(23061999-23062054)
chr1 (441-499)||(23057880-23057938)
chr1 (438-499)||(37369526-37369587)
chr1 (446-499)||(23057568-23057621)
chr1 (446-499)||(23061869-23061922)
[»] chr2 (11 HSPs)
chr2 (436-500)||(24359788-24359852)
chr2 (436-500)||(39082465-39082529)
chr2 (439-500)||(4713123-4713184)
chr2 (439-499)||(42968150-42968210)
chr2 (440-500)||(3197568-3197628)
chr2 (438-499)||(34643018-34643079)
chr2 (439-499)||(8884447-8884507)
chr2 (439-499)||(36772412-36772472)
chr2 (439-499)||(36793526-36793586)
chr2 (439-499)||(37559341-37559401)
chr2 (439-499)||(36756184-36756244)
[»] chr4 (8 HSPs)
chr4 (439-499)||(6067669-6067729)
chr4 (440-500)||(34505290-34505350)
chr4 (438-500)||(50968259-50968321)
chr4 (440-499)||(52818059-52818118)
chr4 (439-500)||(6071145-6071206)
chr4 (439-499)||(31553694-31553754)
chr4 (439-499)||(33871055-33871115)
chr4 (440-499)||(4690149-4690208)
[»] chr8 (7 HSPs)
chr8 (438-500)||(40866312-40866374)
chr8 (439-499)||(7895167-7895227)
chr8 (440-499)||(44415934-44415993)
chr8 (439-499)||(24864608-24864668)
chr8 (439-499)||(38085946-38086006)
chr8 (440-499)||(42014306-42014365)
chr8 (441-499)||(9963300-9963358)
[»] chr7 (6 HSPs)
chr7 (438-499)||(37022209-37022270)
chr7 (438-499)||(25287959-25288020)
chr7 (438-499)||(46075166-46075227)
chr7 (439-499)||(30034301-30034361)
chr7 (441-499)||(34984444-34984502)
chr7 (441-499)||(46972153-46972211)
[»] chr6 (6 HSPs)
chr6 (439-500)||(3992820-3992881)
chr6 (439-499)||(7432434-7432494)
chr6 (439-499)||(7441951-7442011)
chr6 (439-489)||(7425649-7425699)
chr6 (441-499)||(7432997-7433055)
chr6 (439-488)||(7414610-7414659)
[»] chr3 (9 HSPs)
chr3 (439-500)||(29618312-29618373)
chr3 (439-499)||(52638670-52638730)
chr3 (439-499)||(11580203-11580263)
chr3 (441-499)||(35679472-35679530)
chr3 (439-493)||(35692217-35692271)
chr3 (439-488)||(35687869-35687918)
chr3 (438-499)||(41552099-41552160)
chr3 (441-499)||(1488013-1488071)
chr3 (441-499)||(2031252-2031310)
[»] chr5 (1 HSPs)
chr5 (439-499)||(2626086-2626146)


Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-163; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 8 - 330
Target Start/End: Complemental strand, 30341416 - 30341096
Alignment:
Q  8 attctgatagatggctaagcttggggcagtacaatagtattagcattctccgtattatattcatcatgctaaaatatttatttacgctacattttgttag 107  Q
    |||||||||||||||||| |||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30341416 attctgatagatggctaaccttggggcagtacaatagtattattattctccttattatattcatcatgctaaaatatttatttacgctacattttgttag 30341317  T
Q  108 ggtggatgatttctcagttatccacaattttaaggttggagaatagattgactctcaggttaaacatattgttaacattcatgaaaatgttttgtcatgt 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  30341316 ggtggatgatttctcagttatccacaattttaaggttggagaatagattgactctcaggttaaacatattgttaacattcatgaaaatg--ttgtcatgt 30341219  T
Q  208 caactagttcaaaatacattttgttgtaattggtatattatcaagttctaaaaatcaaactcaacacttaggaaatttgtagtgccttgtttattaatga 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  30341218 caactagttcaaaatacattttgttgtaattggtatattatcaagttctaaaaatcaaactcaacacttaggaaatttgtagtgtcttgtttattaatga 30341119  T
Q  308 gaaaagtacttgaatgagaagcg 330  Q
    |||||||||||||||||||||||    
T  30341118 gaaaagtacttgaatgagaagcg 30341096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 232; E-Value: 1e-127
Query Start/End: Original strand, 656 - 960
Target Start/End: Complemental strand, 30340561 - 30340252
Alignment:
Q  656 aggccttctctatcttagattatgacatattctcttcggccgaatatttttcaaaaaataatcgcttcta--------caaaataattcgttttttgtcc 747  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||        |||||| |||||||||||||||    
T  30340561 aggccttctctatcttagattatgacacattctcttcagccgaatatttttcaaaaaataatcgcttctagccttctacaaaatcattcgttttttgtcc 30340462  T
Q  748 ccataaagacacatttttagtcctatcttacaagcattttaatcatgtccataggtggtgggggagctcgcaaaattcattggattcactaatagagggt 847  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||     || |||    
T  30340461 ccataaagacacatttttagtcctatcttacaagcattttaatcatgtccataggtgttgggggagctcgcaaaattcattggattcac----ggatggt 30340366  T
Q  848 ttgttaagtcaaagagaatggtgattt-ggggttcggatgattaaggagtttaatttggagtagttagagaagtggtgttagaagttgtatgttgatcaa 946  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30340365 ttgttaagtcaaagagaatggtgatttgggggttcggatgattaagaagtttaatttggagtagttagagaagtggtgttagaagttgtatgttgatcaa 30340266  T
Q  947 gaaaggttgtggtt 960  Q
    ||||||||||||||    
T  30340265 gaaaggttgtggtt 30340252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 501 - 627
Target Start/End: Complemental strand, 30340716 - 30340591
Alignment:
Q  501 atatttttcatcaactcccaatatattttggtatagtgataaaaagtacaaactttagatttagatgttttgagtttgaatccaactagtattctaagcg 600  Q
    ||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30340716 atatttttcatcaactcccaatatattttggtagagtgataaaat-tacaaactttagatttagatgttttgagtttgaatccaactagtattctaagcg 30340618  T
Q  601 acaggtaaatataaatcattcggtgag 627  Q
    || |||||||||||||| || ||||||    
T  30340617 acgggtaaatataaatcttttggtgag 30340591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 396 - 500
Target Start/End: Complemental strand, 30341028 - 30340924
Alignment:
Q  396 agagacttgaattcaatctgtttaaacattgcacctaagtatcatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggtt 495  Q
    |||||||| || ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30341028 agagacttaaaatcaatatgtttaaacattgcacctaagcatcatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggtt 30340929  T
Q  496 cgatc 500  Q
     ||||    
T  30340928 tgatc 30340924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 440 - 499
Target Start/End: Complemental strand, 30320818 - 30320759
Alignment:
Q  440 tggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgat 499  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  30320818 tggggatgtagctcaaatggtagagcgcccgctttgcatgcgggaggtacagggttcgat 30320759  T

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Target: chr1; HSP #6
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 441 - 499
Target Start/End: Complemental strand, 23058125 - 23058067
Alignment:
Q  441 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgat 499  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  23058125 ggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcgat 23058067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 441 - 496
Target Start/End: Complemental strand, 23057753 - 23057698
Alignment:
Q  441 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttc 496  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  23057753 ggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttc 23057698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 441 - 496
Target Start/End: Complemental strand, 23062054 - 23061999
Alignment:
Q  441 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttc 496  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  23062054 ggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttc 23061999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 441 - 499
Target Start/End: Complemental strand, 23057938 - 23057880
Alignment:
Q  441 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgat 499  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  23057938 gggggtgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcgat 23057880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 438 - 499
Target Start/End: Complemental strand, 37369587 - 37369526
Alignment:
Q  438 catggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgat 499  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||| |||||    
T  37369587 catggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgat 37369526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 446 - 499
Target Start/End: Complemental strand, 23057621 - 23057568
Alignment:
Q  446 tgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgat 499  Q
    ||||||||| |||||||||||||||||||||||||||||||||  |||||||||    
T  23057621 tgtagctcacatggtagagcgctcgctttgcatgcgagaggtatggggttcgat 23057568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 446 - 499
Target Start/End: Complemental strand, 23061922 - 23061869
Alignment:
Q  446 tgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgat 499  Q
    ||||||||| |||||||||||||||||||||||||||||||||  |||||||||    
T  23061922 tgtagctcacatggtagagcgctcgctttgcatgcgagaggtatggggttcgat 23061869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 5e-28; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 436 - 500
Target Start/End: Original strand, 24359788 - 24359852
Alignment:
Q  436 atcatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgatc 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24359788 atcatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgatc 24359852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 436 - 500
Target Start/End: Original strand, 39082465 - 39082529
Alignment:
Q  436 atcatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgatc 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39082465 atcatggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgatc 39082529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 439 - 500
Target Start/End: Complemental strand, 4713184 - 4713123
Alignment:
Q  439 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgatc 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4713184 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgatc 4713123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 439 - 499
Target Start/End: Original strand, 42968150 - 42968210
Alignment:
Q  439 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgat 499  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  42968150 atggggatgtagctcaaatggtagagcgcttgctttgcatgcgagaggtacagggttcgat 42968210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 440 - 500
Target Start/End: Original strand, 3197568 - 3197628
Alignment:
Q  440 tggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgatc 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||    
T  3197568 tggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggtttgatc 3197628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 438 - 499
Target Start/End: Complemental strand, 34643079 - 34643018
Alignment:
Q  438 catggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgat 499  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||| |||||    
T  34643079 catggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgat 34643018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 439 - 499
Target Start/End: Original strand, 8884447 - 8884507
Alignment:
Q  439 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgat 499  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||| ||| |||||    
T  8884447 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgat 8884507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 439 - 499
Target Start/End: Complemental strand, 36772472 - 36772412
Alignment:
Q  439 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgat 499  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||| ||| |||||    
T  36772472 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgat 36772412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 439 - 499
Target Start/End: Complemental strand, 36793586 - 36793526
Alignment:
Q  439 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgat 499  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||| ||| |||||    
T  36793586 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgat 36793526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 439 - 499
Target Start/End: Complemental strand, 37559401 - 37559341
Alignment:
Q  439 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgat 499  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||| ||| |||||    
T  37559401 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgat 37559341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 439 - 499
Target Start/End: Complemental strand, 36756244 - 36756184
Alignment:
Q  439 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgat 499  Q
    |||||||||||||||| ||||||||| |||||||| ||||||||||||||| ||| |||||    
T  36756244 atggggatgtagctcagatggtagagtgctcgcttagcatgcgagaggtacggggatcgat 36756184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 1e-25; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 439 - 499
Target Start/End: Original strand, 6067669 - 6067729
Alignment:
Q  439 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgat 499  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6067669 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgat 6067729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 440 - 500
Target Start/End: Original strand, 34505290 - 34505350
Alignment:
Q  440 tggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgatc 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34505290 tggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgatc 34505350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 438 - 500
Target Start/End: Complemental strand, 50968321 - 50968259
Alignment:
Q  438 catggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgatc 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  50968321 catggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatc 50968259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 440 - 499
Target Start/End: Original strand, 52818059 - 52818118
Alignment:
Q  440 tggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgat 499  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  52818059 tggggatgtagctcaaatggtagagcgcccgctttgcatgcgggaggtacagggttcgat 52818118  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 439 - 500
Target Start/End: Original strand, 6071145 - 6071206
Alignment:
Q  439 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgatc 500  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||| ||||    
T  6071145 atggggatgtagctcaaatggtagagcgcttgctttgcatgcaagaggttcagggtttgatc 6071206  T

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Target: chr4; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 439 - 499
Target Start/End: Original strand, 31553694 - 31553754
Alignment:
Q  439 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgat 499  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||| ||| |||||    
T  31553694 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgat 31553754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 439 - 499
Target Start/End: Complemental strand, 33871115 - 33871055
Alignment:
Q  439 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgat 499  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||| ||| |||||    
T  33871115 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgat 33871055  T

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Target: chr4; HSP #8
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 440 - 499
Target Start/End: Complemental strand, 4690208 - 4690149
Alignment:
Q  440 tggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgat 499  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||| ||| |||||    
T  4690208 tggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgat 4690149  T

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Target: chr8 (Bit Score: 55; Significance: 4e-22; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 438 - 500
Target Start/End: Complemental strand, 40866374 - 40866312
Alignment:
Q  438 catggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgatc 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  40866374 catggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatc 40866312  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 439 - 499
Target Start/End: Complemental strand, 7895227 - 7895167
Alignment:
Q  439 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgat 499  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  7895227 atggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcgat 7895167  T

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Target: chr8; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 440 - 499
Target Start/End: Original strand, 44415934 - 44415993
Alignment:
Q  440 tggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgat 499  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  44415934 tggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcgat 44415993  T

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Target: chr8; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 439 - 499
Target Start/End: Original strand, 24864608 - 24864668
Alignment:
Q  439 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgat 499  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||| ||| |||||    
T  24864608 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgat 24864668  T

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Target: chr8; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 439 - 499
Target Start/End: Original strand, 38085946 - 38086006
Alignment:
Q  439 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgat 499  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||| ||| |||||    
T  38085946 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgat 38086006  T

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Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 440 - 499
Target Start/End: Original strand, 42014306 - 42014365
Alignment:
Q  440 tggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgat 499  Q
    ||||| ||||||||| |||||||||||||||||| |||||||||||| || |||||||||    
T  42014306 tgggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgat 42014365  T

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Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 441 - 499
Target Start/End: Complemental strand, 9963358 - 9963300
Alignment:
Q  441 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgat 499  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||| || |||||||||    
T  9963358 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgat 9963300  T

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Target: chr7 (Bit Score: 54; Significance: 2e-21; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 438 - 499
Target Start/End: Complemental strand, 37022270 - 37022209
Alignment:
Q  438 catggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgat 499  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  37022270 catggggatgtagctcacatggtagagcgctcgctttgcatgcgagaggtacggggttcgat 37022209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 438 - 499
Target Start/End: Original strand, 25287959 - 25288020
Alignment:
Q  438 catggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgat 499  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||| |||||    
T  25287959 catggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgat 25288020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 438 - 499
Target Start/End: Complemental strand, 46075227 - 46075166
Alignment:
Q  438 catggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgat 499  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||| |||||    
T  46075227 catggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgat 46075166  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 439 - 499
Target Start/End: Original strand, 30034301 - 30034361
Alignment:
Q  439 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgat 499  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||| ||| |||||    
T  30034301 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgat 30034361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 441 - 499
Target Start/End: Complemental strand, 34984502 - 34984444
Alignment:
Q  441 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgat 499  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||| ||| |||||    
T  34984502 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgat 34984444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 441 - 499
Target Start/End: Complemental strand, 46972211 - 46972153
Alignment:
Q  441 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgat 499  Q
    ||||| |||||||| |||||||||||||||||| |||||||||||| || |||||||||    
T  46972211 ggggacgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgat 46972153  T

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Target: chr6 (Bit Score: 54; Significance: 2e-21; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 439 - 500
Target Start/End: Complemental strand, 3992881 - 3992820
Alignment:
Q  439 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgatc 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  3992881 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatc 3992820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 439 - 499
Target Start/End: Complemental strand, 7432494 - 7432434
Alignment:
Q  439 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgat 499  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||| ||| |||||    
T  7432494 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgat 7432434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 439 - 499
Target Start/End: Complemental strand, 7442011 - 7441951
Alignment:
Q  439 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgat 499  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||| ||| |||||    
T  7442011 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgat 7441951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 439 - 489
Target Start/End: Complemental strand, 7425699 - 7425649
Alignment:
Q  439 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtac 489  Q
    |||||||||||||||| |||||||||||||||||| ||||| |||||||||    
T  7425699 atggggatgtagctcagatggtagagcgctcgcttagcatgtgagaggtac 7425649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 441 - 499
Target Start/End: Complemental strand, 7433055 - 7432997
Alignment:
Q  441 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgat 499  Q
    |||||||||||||| |||||||||||||||||| |||||| |||||||| ||| |||||    
T  7433055 ggggatgtagctcagatggtagagcgctcgcttagcatgcaagaggtacggggatcgat 7432997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 439 - 488
Target Start/End: Complemental strand, 7414659 - 7414610
Alignment:
Q  439 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggta 488  Q
    |||||||||||||| | |||||||||||||||||| ||||| ||||||||    
T  7414659 atggggatgtagcttagatggtagagcgctcgcttagcatgtgagaggta 7414610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 2e-21; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 439 - 500
Target Start/End: Original strand, 29618312 - 29618373
Alignment:
Q  439 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgatc 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  29618312 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggcacggggttcgatc 29618373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 439 - 499
Target Start/End: Complemental strand, 52638730 - 52638670
Alignment:
Q  439 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgat 499  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||    
T  52638730 atggggatgtagctcaaatggtagagcgctcgcttagcatgcgagaggtacggggatcgat 52638670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 439 - 499
Target Start/End: Original strand, 11580203 - 11580263
Alignment:
Q  439 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgat 499  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||| ||| |||||    
T  11580203 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgat 11580263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 441 - 499
Target Start/End: Original strand, 35679472 - 35679530
Alignment:
Q  441 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgat 499  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||| ||| |||||    
T  35679472 ggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgat 35679530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 439 - 493
Target Start/End: Original strand, 35692217 - 35692271
Alignment:
Q  439 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacaggg 493  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||| ||||    
T  35692217 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtataggg 35692271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 439 - 488
Target Start/End: Original strand, 35687869 - 35687918
Alignment:
Q  439 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggta 488  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  35687869 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggta 35687918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 438 - 499
Target Start/End: Original strand, 41552099 - 41552160
Alignment:
Q  438 catggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgat 499  Q
    ||||||| ||||||||| |||||||||||||||||| |||||||||||| || |||||||||    
T  41552099 catggggttgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgat 41552160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 441 - 499
Target Start/End: Original strand, 1488013 - 1488071
Alignment:
Q  441 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgat 499  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||| || |||||||||    
T  1488013 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgat 1488071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 441 - 499
Target Start/End: Original strand, 2031252 - 2031310
Alignment:
Q  441 ggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgat 499  Q
    |||| ||||||||| |||||||||||||||||| |||||||||||| || |||||||||    
T  2031252 gggggtgtagctcatatggtagagcgctcgcttcgcatgcgagaggcacggggttcgat 2031310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 439 - 499
Target Start/End: Complemental strand, 2626146 - 2626086
Alignment:
Q  439 atggggatgtagctcaaatggtagagcgctcgctttgcatgcgagaggtacagggttcgat 499  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||| ||| |||||    
T  2626146 atggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgat 2626086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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