View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4399-Insertion-2 (Length: 831)
Name: NF4399-Insertion-2
Description: NF4399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4399-Insertion-2 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 753; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 753; E-Value: 0
Query Start/End: Original strand, 8 - 831
Target Start/End: Complemental strand, 45513248 - 45512416
Alignment:
| Q |
8 |
aaagcccattgtaagaaaggtcaagaagggtaagcttctcaaagtgactgaaccataatggaatagaagtgaaattatttccagaaaggtagagtgattc |
107 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45513248 |
aaagcccattataagaaaggtcaagaagggtaagtttctcaaagtgaccgaaccataatggaatagaagtgaaattatttccagaaaggtagagtgattc |
45513149 |
T |
|
| Q |
108 |
aatggaagtcatgtttccaaaagactcaggaatcggaccatgaagctcatttgatgagagatcaagatagataagagatgtcatgttttggaaagcataa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45513148 |
aatggaagtcatgtttccaaaagactcaggaatcggaccatgaagctcatttgatgagagatcaagatagataagagatgtcatgttttggaaagcataa |
45513049 |
T |
|
| Q |
208 |
cgaggaatgagtgaattgtcaactctacatccagacagtgaaagatttaataaagaaggaagtgtattgagtacctggaacaagttgcgcttgtcattga |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
45513048 |
cgaggaatgagtgaattgtcaactctacatccagacagtgaaagatttaataaagaaggaagtgtattgagtacctggaacaagttgcgcgtgtcattga |
45512949 |
T |
|
| Q |
308 |
gacgaataccactcaagtcaaggtgtttgagtgagtgaaggtttgaaatccaactggtgtcgtcatccatttgtaattctctctcttcaaattgcgtaag |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45512948 |
gacgaataccactcaagtcaaggtgtttgagtgagtgaaggtttgaaatccaactggtgccgtcatccatttgtaattctctctcttcaaattgcgtaag |
45512849 |
T |
|
| Q |
408 |
gtaatagtaatggaagctgagatcaaggaattgtaggttcttgagatttctgagactgttgggaatcctcccgctaagacgagcatgagacagagagaga |
507 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45512848 |
gtaatagtaattgaagctgagatcaaggaatcgtaggttcttgagatttctgagactgttgggaatcctcccgctaagacgagcatgagacagagagaga |
45512749 |
T |
|
| Q |
508 |
tactcaaggcgtcccatggaacccaagaacataggaattggactcccactgaaattatttctagacaagtccaaataagtcaagtgttccaattgcaaca |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45512748 |
tactcaaggcgtcccatggaacccaagaacataggaattggactcccactgaaattatttccagacaagtccaaataagtcaagtgttccaattgcaaca |
45512649 |
T |
|
| Q |
608 |
aagatgagctcacatttggagcaactattggtgaacaaggcatgtaatcgtcc---------aaatagtagtgaccaaaatgttcttcttctcgcgacca |
698 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45512648 |
aagatgagctcacatttggagcaactattggtgaacaaggcatgtaatcgtccaaattgtacaaatagtagtgaccaaaatgttcttcttctcgcgacca |
45512549 |
T |
|
| Q |
699 |
agatggttggtgacaaggattcatgagatcaagtttgacaacatgtcgagtaacattgtcacaatcaatgccttcccattggcaacagtgagtgcttttc |
798 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
45512548 |
aaatggttggtgacaaggattcatgagatcaagtttgacaacatgtctagtaacattgtcacaaccaatgccttcccattggcaacagtgagtgcctttc |
45512449 |
T |
|
| Q |
799 |
catgatgaaagcttgtttggtgaatcatgtgca |
831 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
45512448 |
catgatgaaagcttgtttggtgaatcatgtgca |
45512416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 4e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 494 - 625
Target Start/End: Original strand, 22848797 - 22848928
Alignment:
| Q |
494 |
gagacagagagagatactcaaggcgtcccatggaacccaagaacataggaattggactcccactgaaattatttctagacaagtccaaataagtcaagtg |
593 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||| | ||||||||||||||||||| | |||||| ||||| || |||||||||||||||||||| |
|
|
| T |
22848797 |
gagagagagagagatactcaagacgtcccatggaacctacgaacataggaattggactcaaattgaaatcatttccagtcaagtccaaataagtcaagta |
22848896 |
T |
|
| Q |
594 |
ttccaattgcaacaaagatgagctcacatttg |
625 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||| |
|
|
| T |
22848897 |
ttccaagtgcaacaaagatgagctcagatttg |
22848928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University