View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4399_high_1 (Length: 629)
Name: NF4399_high_1
Description: NF4399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4399_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 77 - 618
Target Start/End: Complemental strand, 51124227 - 51123687
Alignment:
| Q |
77 |
tcaaacactatgactttttatcttgttgaaataaatatannnnnnnaggagacaatcgtataagtacataagttataaagaaaaagataatatataatga |
176 |
Q |
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||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
51124227 |
tcaaacactatgactttttatcttgttgaaataaatacattttttt-ggagacaatcatataagtacataagttacaaagaaaaagataatacataatga |
51124129 |
T |
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| Q |
177 |
ttnnnnnnntacattagtttaggtctcaatgattggtttgaatgatgtgagatcccatgttaaaatttcatcgaatgtgtttaacctaatgatatcgaca |
276 |
Q |
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|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||| |
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| T |
51124128 |
ttaaaaaaatacattagttcaggtctcaatgattggtttgaatgatgtgagatcccatgttaaaatttcattgaatatgtttaacctaacgatatcgaca |
51124029 |
T |
|
| Q |
277 |
tcatcaattgagttagatcttacgtattaaaatccgttaatttagtccccaaagtataaaaatacgcacttggagatattggtaatggcgttaggctcta |
376 |
Q |
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|||||||||||||||||||||| |||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
51124028 |
tcatcaattgagttagatcttatgtattaaaatccgtcaatttaatccctaaagtataaaaatacgcacttggagatattggtaatggcattaggctcta |
51123929 |
T |
|
| Q |
377 |
atacaaatacatgttgactactcattccttgataaagcaaacaactattcaaggcaattgcttattctatagtccaagtggtatatataaccaccgaaaa |
476 |
Q |
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| T |
51123928 |
atacaaatacatgttgactactcattccttgataaagcaaacaactattcaaggcaattgcttattctatagtccaagtggtatatataaccaccgaaaa |
51123829 |
T |
|
| Q |
477 |
tttcttaacatatatagaacagaaccaaacaattcttctttgactataaaagcatatttagaaacctcaacaatcatatatacatagcctaacagctatt |
576 |
Q |
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| T |
51123828 |
tttcttaacatatatagaacagaaccaaacaattcttctttgactataaaagcatatttagaaacctcaacaatcatatatacatagcctaacagctatt |
51123729 |
T |
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| Q |
577 |
ccataagttgcatcaacattccatcaaaacctcaaccctttg |
618 |
Q |
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| T |
51123728 |
ccataagttgcatcaacattccatcaaaacctcaaccctttg |
51123687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 9e-44; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 357 - 516
Target Start/End: Original strand, 32149981 - 32150139
Alignment:
| Q |
357 |
ggtaatggcgttaggctctaatacaaatacatg---ttgactactcattccttgataaagcaaacaactattcaaggcaattgcttattctatagtccaa |
453 |
Q |
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||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32149981 |
ggtaatggcattaggctctaatacaaatacatgctattgactactcattccttgataaagcaaacaactattcaaggcaattgcttattctatagcccaa |
32150080 |
T |
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| Q |
454 |
gtggtatatataaccaccgaaaatttcttaacatatatagaacagaaccaaacaattcttctt |
516 |
Q |
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|||| |||||||||||| |||| ||||| |||||||||| ||||||||||||||||| |
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| T |
32150081 |
gtgg--tatataaccaccaaaaaaaatttaac--atatagaacaagaccaaacaattcttctt |
32150139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 559 - 606
Target Start/End: Original strand, 32150143 - 32150190
Alignment:
| Q |
559 |
catagcctaacagctattccataagttgcatcaacattccatcaaaac |
606 |
Q |
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|||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
32150143 |
catagcctaacatctcttccataagttgcatcaacattccatcaaaac |
32150190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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