View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4399_high_10 (Length: 326)

Name: NF4399_high_10
Description: NF4399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4399_high_10
NF4399_high_10
[»] chr6 (8 HSPs)
chr6 (1-315)||(6920902-6921214)
chr6 (1-234)||(6954147-6954383)
chr6 (1-235)||(6942589-6942831)
chr6 (2-153)||(6934945-6935096)
chr6 (2-201)||(6947493-6947695)
chr6 (4-152)||(20770829-20770982)
chr6 (1-136)||(17369861-17369996)
chr6 (197-237)||(17370022-17370062)
[»] chr7 (12 HSPs)
chr7 (2-201)||(1985617-1985818)
chr7 (7-131)||(15571632-15571756)
chr7 (5-152)||(14076854-14077001)
chr7 (5-152)||(14386882-14387029)
chr7 (1-119)||(13416657-13416775)
chr7 (70-214)||(18514468-18514618)
chr7 (79-151)||(22064356-22064428)
chr7 (79-146)||(19350803-19350870)
chr7 (69-143)||(19597401-19597475)
chr7 (79-117)||(22524940-22524978)
chr7 (248-292)||(15571409-15571453)
chr7 (79-151)||(18982666-18982738)
[»] scaffold0354 (1 HSPs)
scaffold0354 (5-227)||(7670-7887)
[»] chr4 (5 HSPs)
chr4 (79-152)||(53775101-53775174)
chr4 (79-117)||(2911335-2911373)
chr4 (79-149)||(11970722-11970792)
chr4 (175-236)||(53775166-53775226)
chr4 (82-150)||(11981422-11981490)
[»] chr2 (4 HSPs)
chr2 (79-139)||(18908517-18908577)
chr2 (1-144)||(14515070-14515217)
chr2 (79-139)||(18913265-18913325)
chr2 (79-146)||(20712266-20712331)
[»] chr5 (1 HSPs)
chr5 (1-140)||(18964561-18964700)
[»] scaffold0097 (1 HSPs)
scaffold0097 (79-146)||(16105-16170)
[»] chr8 (1 HSPs)
chr8 (79-143)||(27618727-27618791)


Alignment Details
Target: chr6 (Bit Score: 292; Significance: 1e-164; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 6921214 - 6920902
Alignment:
Q  1 attctctataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatgttgaaagcttggtatcga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  6921214 attctctataattggaaagataatagagcaaagataattgaaagtaccaataaaattttgtggttcactgccaagggatatgttgaaagcttggtatcga 6921115  T
Q  101 cttcttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtgttagcttgtgtatggtacaatgtattttgtgataatttcatatcatggttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  6921114 cttcttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtgttagcttgtgtatggtacaatgtattttgtgataatt--atatcatggttt 6921017  T
Q  201 tgatttgattatattgttgaatgattatctgttttattaactgtgaattttctcaattttatttactgttctaattttgagtttttatgtgtccattgat 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  6921016 tgatttgattatattgttgaatgattatctgttttattaactgtgaattttctcgattttatttactgttctaattttgagtttttatgtgtccattgat 6920917  T
Q  301 agaatgcaccctttg 315  Q
    |||||||||||||||    
T  6920916 agaatgcaccctttg 6920902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 6954383 - 6954147
Alignment:
Q  1 attctctataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatgttgaaagcttggtatcga 100  Q
    |||||||||||||  ||| |||||||||||| || |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  6954383 attctctataatttaaaaaataatagagcaacgagaattaaaagtaccaataaaatttggtggtccgctgccaagggatatgttgaaagcttggtatcga 6954284  T
Q  101 cttcttgaaagtaagtttttgtt-cgatgatttacttgtttgaatttgtgttagcttgtgtatggtacaatgtattttgtga-taatttcatatcatggt 198  Q
    ||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||| ||||||    
T  6954283 cttcttgaaagtatgttttttttccgatgatttacttgtttgaatttgtgttagcttgtctatggtacaatgtattttgtgattattttcataccatggt 6954184  T
Q  199 tttgatttgattatattg-ttgaatgattatctgttt 234  Q
    |||||||||||||||||| ||||||||||||||||||    
T  6954183 tttgatttgattatattgtttgaatgattatctgttt 6954147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 6942831 - 6942589
Alignment:
Q  1 attctctataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatgttgaaagcttggtatcga 100  Q
    ||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  6942831 attctctataatttgaaagataatagagcaaagagaattaaaagtaccaataaaatttggtggtccactgccaagggatatgttgaaagcttggtatcaa 6942732  T
Q  101 cttcttgaaagtaagtttttgttcgatgatttactt-------gtttgaatttgtgttagcttgtgtatggtacaatgtattttgtgataattt-catat 192  Q
    ||||||||||||||||||||||| ||| |||| | |        ||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||    
T  6942731 cttcttgaaagtaagtttttgtttgattatttccatatcatggttttgaatttgtgttagcttgtgtatggtagaatgtattttgtgattatttccatat 6942632  T
Q  193 catggttttgatttgattatattgttgaatgattatctgtttt 235  Q
    |||||||||||||| | ||||||||||||||||||||||||||    
T  6942631 catggttttgattttaatatattgttgaatgattatctgtttt 6942589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 2 - 153
Target Start/End: Complemental strand, 6935096 - 6934945
Alignment:
Q  2 ttctctataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatgttgaaagcttggtatcgac 101  Q
    ||||||||||||||| |||||||| |||||||| |||| |||||| |  ||||| || ||||| || ||||||||||||||||||||| |||||||||||    
T  6935096 ttctctataattggagagataatacagcaaagagaattaaaagtaacggtaaaaatttgtggttcagtgccaagggatatgttgaaagtttggtatcgac 6934997  T
Q  102 ttcttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtgttag 153  Q
    |||||||| |||| ||| | ||| ||||||||||||||||||||||||||||    
T  6934996 ttcttgaaggtaattttctcttcaatgatttacttgtttgaatttgtgttag 6934945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 2 - 201
Target Start/End: Complemental strand, 6947695 - 6947493
Alignment:
Q  2 ttctctataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatgttgaaagcttggtatcgac 101  Q
    ||||||||||||||| ||||||||||| ||||| |||| |||||||||| ||||||| ||||| || |||||| ||||||||||||||||||| |||||     
T  6947695 ttctctataattggagagataatagagtaaagagaattaaaagtaccaacaaaattttgtggttcagtgccaatggatatgttgaaagcttggcatcgat 6947596  T
Q  102 ttcttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtgttagcttgtgtatg--gtacaatgtattttgtga-taatttcatatcatggt 198  Q
     | ||||| |||||||| | || ||||||||||||||||| ||||| ||||| || ||||||  ||||||| |||| ||||| || ||||| ||||||||    
T  6947595 attttgaaggtaagtttctcttggatgatttacttgtttgtatttgagttagtttatgtatgatgtacaatatattgtgtgattattttcaaatcatggt 6947496  T
Q  199 ttt 201  Q
    |||    
T  6947495 ttt 6947493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 4 - 152
Target Start/End: Original strand, 20770829 - 20770982
Alignment:
Q  4 ctctataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatgttgaaa-----gcttggtatc 98  Q
    |||||||||| |||||||||||||  ||||| ||||||||||||| || ||||||||||||  | ||| ||||  ||||||||||     | ||||||||    
T  20770829 ctctataatttgaaagataatagactaaagagaattgaaagtacctatgaaatttggtggtatagtgctaaggattatgttgaaagtttggtttggtatc 20770928  T
Q  99 gacttcttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtgtta 152  Q
    ||| | |||||||||||||  | |||||||||||||||||||||||||||||||    
T  20770929 gacctgttgaaagtaagttcctcttcgatgatttacttgtttgaatttgtgtta 20770982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 17369861 - 17369996
Alignment:
Q  1 attctctataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatgttgaaagcttggtatcga 100  Q
    |||||||||||||||| | ||||||||| ||||| |||||||| |||| ||| ||||   |||    || ||||||| |||||||||||||||||||| |    
T  17369861 attctctataattggagaaataatagagtaaagaaaattgaaaatacctatagaattatttggaaggcttccaagggctatgttgaaagcttggtatcta 17369960  T
Q  101 cttcttgaaagtaagtttttgttcgatgatttactt 136  Q
    ||| |||||||||||||  | |||||||||||||||    
T  17369961 cttgttgaaagtaagttactcttcgatgatttactt 17369996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 17370022 - 17370062
Alignment:
Q  197 gttttgatttgattatattgttgaatgattatctgttttat 237  Q
    ||||||||||||||  |||||||||||||||||| ||||||    
T  17370022 gttttgatttgattgcattgttgaatgattatctattttat 17370062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 2 - 201
Target Start/End: Complemental strand, 1985818 - 1985617
Alignment:
Q  2 ttctctataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatgttgaaagcttggtatcgac 101  Q
    ||||||||||| ||| ||||||||||| | | | |||| |||||||||||| ||||| ||||| || |||||||||||| |||||||||||||||||||     
T  1985818 ttctctataataggagagataatagagtagaaagaattaaaagtaccaatagaattttgtggttcagtgccaagggatacgttgaaagcttggtatcgat 1985719  T
Q  102 ttcttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtgttagcttgtgtatg-gtacaatgtattttgtga-taatttcatatcatggtt 199  Q
    |||||||| |||||||| | |||||||||||||||||||||||||||||||| |||||||||  |||||| |||| ||||| || ||||| |||||||||    
T  1985718 ttcttgaaggtaagtttctcttcgatgatttacttgtttgaatttgtgttagtttgtgtatgtatacaatatattgtgtgattattttcaaatcatggtt 1985619  T
Q  200 tt 201  Q
    ||    
T  1985618 tt 1985617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 7 - 131
Target Start/End: Complemental strand, 15571756 - 15571632
Alignment:
Q  7 tataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatgttgaaagcttggtatcgacttctt 106  Q
    |||||||||| | ||||||||| ||||| |||| |||||| ||| |||||  | ||||||| ||||| |||||||||||||||||||||||||||||| |    
T  15571756 tataattggagatataatagagtaaagagaattaaaagtaacaaaaaaatccgttggtccaatgccaggggatatgttgaaagcttggtatcgacttcct 15571657  T
Q  107 gaaagtaagtttttgttcgatgatt 131  Q
    |||||||||||||||||||||||||    
T  15571656 gaaagtaagtttttgttcgatgatt 15571632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 152
Target Start/End: Original strand, 14076854 - 14077001
Alignment:
Q  5 tctataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatgttgaaagcttggtatcgacttc 104  Q
    |||||||||||| ||||||||||| ||||| |||| ||| |||||||| ||||| |||||    | |||||   |||||||||||||||||||||||||     
T  14076854 tctataattggagagataatagagtaaagagaattaaaaataccaatagaattttgtggttgcattccaagaattatgttgaaagcttggtatcgacttt 14076953  T
Q  105 ttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtgtta 152  Q
    | |||||||||||  | ||||||||||||| ||||||||| |||||||    
T  14076954 tagaaagtaagttcctcttcgatgatttacatgtttgaatctgtgtta 14077001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 152
Target Start/End: Original strand, 14386882 - 14387029
Alignment:
Q  5 tctataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatgttgaaagcttggtatcgacttc 104  Q
    |||||||||||| ||||||||||| ||||| |||| ||| |||||||| ||||| |||||    | |||||   |||||||||||||||||||||||||     
T  14386882 tctataattggagagataatagagtaaagagaattaaaaataccaatagaattttgtggttgcattccaagaattatgttgaaagcttggtatcgacttt 14386981  T
Q  105 ttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtgtta 152  Q
    | |||||||||||  | ||||||||||||| ||||||||| |||||||    
T  14386982 tagaaagtaagttcctcttcgatgatttacatgtttgaatctgtgtta 14387029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 13416775 - 13416657
Alignment:
Q  1 attctctataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatgttgaaagcttggtatcga 100  Q
    |||| ||| ||| ||| ||||||||||| ||||| |||| ||||| ||||| |||||||||||| |   |||||||||||||||||||||||||||||||    
T  13416775 attcactacaataggagagataatagagtaaagagaattaaaagtcccaatcaaatttggtggttcgacgccaagggatatgttgaaagcttggtatcga 13416676  T
Q  101 cttcttgaaagtaagtttt 119  Q
    ||||  ||||||| |||||    
T  13416675 cttcaagaaagtatgtttt 13416657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 214
Target Start/End: Complemental strand, 18514618 - 18514468
Alignment:
Q  70 gccaagggatatgttgaaagcttggtatc----gacttcttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtgttagcttgtgtatg-g 164  Q
    ||||||| ||||||||| |||||| ||||    ||||| | ||||||||||   |||||  ||||||||||||||||||||| ||||  | ||||  | |    
T  18514618 gccaaggcatatgttgagagcttgatatctacagacttgtggaaagtaagtccctgttccgtgatttacttgtttgaatttgagttaaatcgtgtccgtg 18514519  T
Q  165 tacaatgtattttgtgataattt-catatcatggttttgatttgattatat 214  Q
    ||||||||||  ||| || |||| |||||||||||||||||||||||||||    
T  18514518 tacaatgtatcgtgtcattattttcatatcatggttttgatttgattatat 18514468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 151
Target Start/End: Original strand, 22064356 - 22064428
Alignment:
Q  79 tatgttgaaagcttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtgtt 151  Q
    |||| |||||| ||||| |||  || |||||||||||||| | | ||| ||||||||||||||||||||||||    
T  22064356 tatgatgaaaggttggtttcgtattgttgaaagtaagtttctttacgacgatttacttgtttgaatttgtgtt 22064428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 79 - 146
Target Start/End: Complemental strand, 19350870 - 19350803
Alignment:
Q  79 tatgttgaaagcttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtttgaattt 146  Q
    |||||||||||||| || || || |||||||||||||||| | ||  |||||||| ||||||||||||    
T  19350870 tatgttgaaagcttagtttcaacctcttgaaagtaagtttctctttaatgatttaattgtttgaattt 19350803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 143
Target Start/End: Complemental strand, 19597475 - 19597401
Alignment:
Q  69 tgccaagggatatgttgaaagcttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtttgaa 143  Q
    |||||| | |||||||||||||||||| ||||||  || ||||||||||| | ||| |  |||||||||||||||    
T  19597475 tgccaatgaatatgttgaaagcttggtttcgactaattaaaagtaagtttcttttcaacaatttacttgtttgaa 19597401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 117
Target Start/End: Complemental strand, 22524978 - 22524940
Alignment:
Q  79 tatgttgaaagcttggtatcgacttcttgaaagtaagtt 117  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  22524978 tatgttgaaagcttggtttcaacttcttgaaagtaagtt 22524940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 292
Target Start/End: Complemental strand, 15571453 - 15571409
Alignment:
Q  248 ttttctcaattttatttactgttctaattttgagtttttatgtgt 292  Q
    |||| |||||||||||||||||| |||||||||| ||||| ||||    
T  15571453 ttttttcaattttatttactgttttaattttgagcttttaagtgt 15571409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 151
Target Start/End: Complemental strand, 18982738 - 18982666
Alignment:
Q  79 tatgttgaaagcttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtgtt 151  Q
    ||||||||||||||||| ||||||  |||||||||| ||| | ||| |  ||||||||| |||||||| ||||    
T  18982738 tatgttgaaagcttggtttcgactagttgaaagtaaatttcttttcaactatttacttgattgaatttttgtt 18982666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0354 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: scaffold0354
Description:

Target: scaffold0354; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 5 - 227
Target Start/End: Original strand, 7670 - 7887
Alignment:
Q  5 tctataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatgttgaaagcttggtatcgacttc 104  Q
    ||||||||| || ||||||||||| ||| | |||| ||||||||||| |||||  ||||| || ||||||||||||||| |||||||||||| |||||||    
T  7670 tctataatttgagagataatagagtaaatagaattaaaagtaccaatcaaattccgtggttcaatgccaagggatatgtagaaagcttggtaccgacttc 7769  T
Q  105 ttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtgttagcttgtgtatggtacaatgtattttgtga-taatttcatatcatggttttga 203  Q
    ||||| ||| | ||||| ||||| |||||||||||||||||| |||||| ||||     ||||| ||| || ||||| || |||||||| ||||||||||    
T  7770 ttgaaggtatg-ttttgctcgatcatttacttgtttgaatttttgttagtttgt-----gtacattgtcttgtgtgattattttcatattatggttttga 7863  T
Q  204 tttgattatattgttgaatgatta 227  Q
    ||||||||||||||| || |||||    
T  7864 tttgattatattgttcaacgatta 7887  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 79 - 152
Target Start/End: Original strand, 53775101 - 53775174
Alignment:
Q  79 tatgttgaaagcttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtgtta 152  Q
    |||||||||||||||||||| || | |||||||||||||  | ||| | |||||||||||||||||||||||||    
T  53775101 tatgttgaaagcttggtatcaacgtgttgaaagtaagttcctcttccaagatttacttgtttgaatttgtgtta 53775174  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 117
Target Start/End: Original strand, 2911335 - 2911373
Alignment:
Q  79 tatgttgaaagcttggtatcgacttcttgaaagtaagtt 117  Q
    ||||| |||||||||||||| ||||||||||||||||||    
T  2911335 tatgtagaaagcttggtatcaacttcttgaaagtaagtt 2911373  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 149
Target Start/End: Complemental strand, 11970792 - 11970722
Alignment:
Q  79 tatgttgaaagcttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtg 149  Q
    ||||||||||||||||| | |  || |||||||||||||| | | |||  |||||||||||||||||||||    
T  11970792 tatgttgaaagcttggttttgtattgttgaaagtaagtttctctacgacaatttacttgtttgaatttgtg 11970722  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 53775166 - 53775226
Alignment:
Q  175 tttgtgataatttcatatcatggttttgatttgattatattgttgaatgattatctgtttta 236  Q
    |||||| |||||| |||| || |||||||||||||| ||||||||||||||| ||| |||||    
T  53775166 tttgtgttaattt-atatgatagttttgatttgattgtattgttgaatgattctctctttta 53775226  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 150
Target Start/End: Complemental strand, 11981490 - 11981422
Alignment:
Q  82 gttgaaagcttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtttgaatttgtgt 150  Q
    |||||||||||||| |||  || |||||||||||||| | | | |  ||||||||||||||||||||||    
T  11981490 gttgaaagcttggtttcgtattgttgaaagtaagtttctctacaacaatttacttgtttgaatttgtgt 11981422  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 79 - 139
Target Start/End: Complemental strand, 18908577 - 18908517
Alignment:
Q  79 tatgttgaaagcttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtt 139  Q
    ||||||||||||||||| || || |||||||||||||||||| |||||||||||| |||||    
T  18908577 tatgttgaaagcttggtttcaacctcttgaaagtaagtttttcttcgatgatttaattgtt 18908517  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 14515070 - 14515217
Alignment:
Q  1 attctctataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatgttgaaagcttggtatcga 100  Q
    ||||| || ||||||||||||||||||| ||||| |||  |||| ||||||| ||||   |||  ||  ||||||| |||||||||||| ||| ||||||    
T  14515070 attctttacaattggaaagataatagagtaaagagaatcaaaagcaccaatagaattacatggagcagggccaaggcatatgttgaaagtttgatatcga 14515169  T
Q  101 c----ttcttgaaagtaagtttttgttcgatgatttacttgtttgaat 144  Q
    |    || || ||||||||||  ||||| |||||||||||||||||||    
T  14515170 cagacttgttaaaagtaagttcctgttcaatgatttacttgtttgaat 14515217  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 79 - 139
Target Start/End: Complemental strand, 18913325 - 18913265
Alignment:
Q  79 tatgttgaaagcttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtt 139  Q
    |||||||||||||||||||| || |||||||||||||||| | ||| |||||||| |||||    
T  18913325 tatgttgaaagcttggtatcaacctcttgaaagtaagtttctcttcaatgatttaattgtt 18913265  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 146
Target Start/End: Complemental strand, 20712331 - 20712266
Alignment:
Q  79 tatgttgaaagcttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtttgaattt 146  Q
    ||||| ||||||||||| || |||| |||||||||||||  | ||  |||||||||||||||||||||    
T  20712331 tatgtcgaaagcttggtttcaacttgttgaaagtaagttcctctt--atgatttacttgtttgaattt 20712266  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 18964700 - 18964561
Alignment:
Q  1 attctctataattggaaagataatagagcaaagataattgaaagtaccaataaaatttggtggtccactgccaagggatatgttgaaagcttggtatcga 100  Q
    |||||||||||||||| ||||||||||| ||||| |||||||| |||   |||||  |  |||    || ||||||| ||||||||||||||| |||| |    
T  18964700 attctctataattggagagataatagagtaaagaaaattgaaaatacatgtaaaaaattttggaaggcttccaagggctatgttgaaagcttgatatcta 18964601  T
Q  101 cttcttgaaagtaagtttttgttcgatgatttacttgttt 140  Q
    ||| |||||||||||||  | || ||||| ||||||||||    
T  18964600 cttgttgaaagtaagttcctctttgatgacttacttgttt 18964561  T

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Target: scaffold0097 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 146
Target Start/End: Complemental strand, 16170 - 16105
Alignment:
Q  79 tatgttgaaagcttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtttgaattt 146  Q
    ||||| ||||||||||| || |||| |||||||||||||  | ||  |||||||||||||||||||||    
T  16170 tatgtcgaaagcttggtttcaacttgttgaaagtaagttcctctt--atgatttacttgtttgaattt 16105  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 143
Target Start/End: Original strand, 27618727 - 27618791
Alignment:
Q  79 tatgttgaaagcttggtatcgacttcttgaaagtaagtttttgttcgatgatttacttgtttgaa 143  Q
    ||||||||||||||||| || | ||||||||||||||||  | || || || |||||||||||||    
T  27618727 tatgttgaaagcttggtttcaatttcttgaaagtaagttcctatttgacgaattacttgtttgaa 27618791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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