View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4399_high_2 (Length: 517)
Name: NF4399_high_2
Description: NF4399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4399_high_2 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 444; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 7 - 517
Target Start/End: Original strand, 30568941 - 30569453
Alignment:
| Q |
7 |
gagatgaaactgcatgatacggatatcttcagtcgcagtgatgacgccatacagacatgaaaagacaaagatgctgctactagaatgatgtaagttatat |
106 |
Q |
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| T |
30568941 |
gagatgaaactgcatgatacggatatcttcagtcgcagtggtgacgccatacagacatgaaaagacaacgatgctgctactagaatgatgtaagttatat |
30569040 |
T |
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| Q |
107 |
ttaccttgtgattatatatgtagtttcatgctatcaaataatagaaaataagactcgagtgagatgaacaattttcaagcatttccagaaacaacaaaaa |
206 |
Q |
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| T |
30569041 |
ttaccttgtgattatatatgtaatttcatgctatcaaataatagaaaataagactct--tgaggtgaacaattttcaagcatttccagaaacaacaaaaa |
30569138 |
T |
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| Q |
207 |
tgtcaaca--taattgttttcattatttcctaaaatgcaacgtctttagataacaaattaccttgcatcgatcacaataaatcacttcaaaagtatctct |
304 |
Q |
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| T |
30569139 |
tgtcaacacataattgttttcattatttccgaaaatgcaacgtctttagataacaaattaccttgcatcgatcacaataaatcacttcaaaagtatctct |
30569238 |
T |
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| Q |
305 |
tctt---attagcaagttaaaatgaacataacctgaaataaaacaaaaaccattttcacaaagtaagcatgtccttagttttcaagaaatgaacaaaatt |
401 |
Q |
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| T |
30569239 |
tcttcttattagcaagttaaaatgaacataacctgaattaaaacaaaa-ccattttcacaaagtaagcatgtccttagttttcaagaaatgaacaaaatt |
30569337 |
T |
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| Q |
402 |
atatctattgtttattcttttactgtatgattagaaatggatggctagggttttatagaatataactatatgattctatgatattgcaggaattgtaaat |
501 |
Q |
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| T |
30569338 |
atatctattgtttattcttttactgtatgattagaaatggatggctagggttttatagaatataactatatgattctatgatattgcaggaattgtaaat |
30569437 |
T |
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| Q |
502 |
aattcaacttatctat |
517 |
Q |
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| T |
30569438 |
aattcaacttatctat |
30569453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 141 - 517
Target Start/End: Original strand, 30572616 - 30572987
Alignment:
| Q |
141 |
caaataatagaaaataagactcgagtgagatgaacaattttcaagcatttccagaaacaacaaaaatgtcaacataattgttttcattatttcctaaaat |
240 |
Q |
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| T |
30572616 |
caaataatagaaaaaaagactct--tgaagtgatcaatttcctagcatttccagaaacaacgaaaatgtcaatgtaactgttttcattatttccgaaaat |
30572713 |
T |
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| Q |
241 |
gcaacgtctttagataacaaattaccttgcatcgatcacaataaatcacttcaaaagtatctcttctt---attagcaagttaaaatgaacataacctga |
337 |
Q |
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| T |
30572714 |
gcatcatctttagataacaaattaccttgcatcaatcacaataaatcacttcaaaagtctctcttcttcttattaccaagttaaaatgaacataat---- |
30572809 |
T |
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| Q |
338 |
aataaaacaaaaaccattttcacaaagtaagcatgtccttagttttcaagaaatgaacaaaattatatctattgtttattcttttactgtatgattagaa |
437 |
Q |
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| T |
30572810 |
--taaaacaaaagacatttttacaaagtaagcaggtccttagttttcaagaaatgaacaaaattatatctattgtttattcttttactgtatgattagaa |
30572907 |
T |
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| Q |
438 |
atggatggctagggttttatagaatataactatatgattctatgatattgcaggaattgtaaataattcaacttatctat |
517 |
Q |
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| T |
30572908 |
attgatggctagggttttatagaatataactatatgattctatgatattgcaggaattgtaaataattcaacttatctat |
30572987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 7 - 145
Target Start/End: Original strand, 30572458 - 30572596
Alignment:
| Q |
7 |
gagatgaaactgcatgatacggatatcttcagtcgcagtgatgacgccatacagacatgaaaagacaaagatgctgctactagaatgatgtaagttatat |
106 |
Q |
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| T |
30572458 |
gagatgaaacttcatgatacgaatatctccagtcgcagtggtgatgccatacagacatgaaaagacagcgatgctgctactagattggtataacttttac |
30572557 |
T |
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| Q |
107 |
ttaccttgtgattatatatgtagtttcatgctatcaaat |
145 |
Q |
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| T |
30572558 |
ttaccttgtgattaaatatgtagtttcatgttaccaaat |
30572596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 16265487 - 16265429
Alignment:
| Q |
185 |
gcatttccagaaacaacaaaaatgtcaacataattgttttcattatttcctaaaatgca |
243 |
Q |
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| T |
16265487 |
gcatttccagaaacaatgaaaatgtcaaaatagctattttcattatttcctgaaatgca |
16265429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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