View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4399_high_6 (Length: 364)
Name: NF4399_high_6
Description: NF4399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4399_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 10056164 - 10056536
Alignment:
| Q |
1 |
aaaaacacagttaattgtatttatttattttttggttaatttgtcaaaaaataattgttaagtaacttatcgatataattcactatttgaggtgaat--- |
97 |
Q |
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| T |
10056164 |
aaaaacacagttaattgtatttatttattttttggttaatttgtcaaaaaatgattgttaagtaacttatcgatagaattcactatttgaggtgaataag |
10056263 |
T |
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| Q |
98 |
--------ccggaattcgaaatccgacatatacatatttcattgcattgtctttaccattaacatacaggagagaagaagtttaa-----catcattatt |
184 |
Q |
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| T |
10056264 |
ttaagaatctggaatttgaattccgacatatacatatttcattgtattatctttaccattaacatgcaggagagaagaggtttaaagtaacatcattatt |
10056363 |
T |
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| Q |
185 |
cattgactcctcttttatttttctcctcattagagctacctgatagatacaatgcttacgaagttaaaccttctccatcgaggatggtcttaggatttca |
284 |
Q |
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|||||| |||||||||||||||||||||||||||| ||||| | || ||||||||||| ||| ||||||||||||| | ||||||||||||||||||||| |
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| T |
10056364 |
cattgattcctcttttatttttctcctcattagagttacctaaaagttacaatgcttatgaacttaaaccttctccgttgaggatggtcttaggatttca |
10056463 |
T |
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| Q |
285 |
acgtcaagcaatcaatcatattattcaagagtaacaacaaaatttaacttcgaataaatggcatttcttctca |
357 |
Q |
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| T |
10056464 |
acgtcaagcgatcaatcaaattattcaagagtaacaacaaaatttaacttcgaataaatgacatttcttctca |
10056536 |
T |
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