View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4399_high_7 (Length: 362)
Name: NF4399_high_7
Description: NF4399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4399_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 15 - 333
Target Start/End: Complemental strand, 26101867 - 26101548
Alignment:
| Q |
15 |
agatatcaaatattaacagtgcatacgctatcaactgatttgtttctctaccacaacaaaaacgtaatatttattttagacttgtaaatttttcaaaaaa |
114 |
Q |
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| T |
26101867 |
agatatcaaatattaacagtgcatacgctatcaactgatttgtttctctaccacaacaaaaacgtaatatttattttagacttgtaaatttttcaaaaaa |
26101768 |
T |
|
| Q |
115 |
aa-ggtcaaaccatctcnnnnnnnnnngtgaagttatgcttatccttaatcacatgatttctcaactaaatatatcatcaataacaggcacccaagacat |
213 |
Q |
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| T |
26101767 |
aaaggtcaaaccatctaaaaaaaaaaagtgaagttatgcttatccttaatcacatgatttctcaactaaatatatcatcaataaaaggcacccaagacat |
26101668 |
T |
|
| Q |
214 |
ggaacttcagtttgaaagtgtagttgtcatttagctccccaaattatcttaacagaaaatgacgaattctcttaatgaaatagctaaattgcaactttaa |
313 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26101667 |
ggaacttcagtttgaaagtgtagttgtcatttaggtccccaaattatcttaacagaaaatgacgaattctcttaatgaaatagctaaattgcaactttaa |
26101568 |
T |
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| Q |
314 |
caatatattcatcttgtcac |
333 |
Q |
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|||||||||||||||||||| |
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| T |
26101567 |
caatatattcatcttgtcac |
26101548 |
T |
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