View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4399_low_1 (Length: 464)
Name: NF4399_low_1
Description: NF4399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4399_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 18 - 455
Target Start/End: Original strand, 32361371 - 32361800
Alignment:
| Q |
18 |
aaaatacaacctagctagtcatcccataatggacacttgtctctatctgatattggactccaatctccaaagcactactactattgaatattgataattg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32361371 |
aaaatacaacctagctagtcatcccataatggacacttgtctctatctgatattggactccaatctccaaagcactactactattgaatattgataattg |
32361470 |
T |
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| Q |
118 |
agttgagagcaagtgcatgatgtgtccaatgtgctattttatcagtannnnnnnnnnnnnnnnncgggttgtgatcaatgttaaggaccaaataagcact |
217 |
Q |
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| T |
32361471 |
agttgagagcaagtgcatgatgtgtccaatgtgctattttatcggtatgtgtgt----------cgggttgtgatcaatgttaaggaccaaataagcact |
32361560 |
T |
|
| Q |
218 |
accccagatggaactctcagctctccataccacaatttccacaaatgcaactcatagacatagtattattcacctatggaaaacaatagtatactcaaat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32361561 |
accccagatggaactctcagctctccataccacaatttccacaaatgcaactcatagacatagtattattcacctatggaaaacaatagtatactcaaat |
32361660 |
T |
|
| Q |
318 |
ctcaataagtcaatatatataccatactggacacagcacataaatatcactatctatgtcagtagtactgtgcctagtatagctat--atatggtttcac |
415 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||| |
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| T |
32361661 |
ctcaatacgtcaatatatataccatactggacacagcacataaatatcactatctatgtcagttgtactgtgcctggtatagctatacatatggtttcac |
32361760 |
T |
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| Q |
416 |
tttggattaacttactaaaaaatacaccccacagaattat |
455 |
Q |
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| T |
32361761 |
tttggattaacttactaaaaaatacaccccacagaattat |
32361800 |
T |
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