View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4401-Insertion-1 (Length: 1051)

Name: NF4401-Insertion-1
Description: NF4401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4401-Insertion-1
NF4401-Insertion-1
[»] chr7 (18 HSPs)
chr7 (14-778)||(33747048-33747796)
chr7 (777-990)||(28291840-28292052)
chr7 (779-990)||(24528973-24529183)
chr7 (776-987)||(7357920-7358130)
chr7 (779-983)||(33226916-33227113)
chr7 (779-927)||(9973915-9974062)
chr7 (849-938)||(47762348-47762436)
chr7 (778-821)||(10437414-10437457)
chr7 (778-821)||(10451124-10451167)
chr7 (922-961)||(16538845-16538884)
chr7 (922-961)||(16626778-16626817)
chr7 (922-961)||(17496036-17496075)
chr7 (922-961)||(17557139-17557178)
chr7 (922-961)||(32212137-32212176)
chr7 (922-961)||(43893478-43893517)
chr7 (859-990)||(7874443-7874575)
chr7 (922-961)||(12935020-12935059)
chr7 (894-953)||(21235491-21235550)
[»] chr5 (8 HSPs)
chr5 (779-997)||(13581981-13582199)
chr5 (778-996)||(7805650-7805868)
chr5 (779-987)||(14374710-14374917)
chr5 (890-970)||(31987350-31987430)
chr5 (853-977)||(9361776-9361898)
chr5 (922-961)||(24776231-24776270)
chr5 (922-961)||(36254453-36254492)
chr5 (922-961)||(24770777-24770816)
[»] chr1 (16 HSPs)
chr1 (779-996)||(10106618-10106835)
chr1 (779-991)||(13891387-13891598)
chr1 (779-988)||(38734711-38734919)
chr1 (779-990)||(26650428-26650637)
chr1 (778-961)||(31289367-31289548)
chr1 (779-987)||(39746674-39746880)
chr1 (886-989)||(19406287-19406390)
chr1 (779-924)||(14582397-14582541)
chr1 (778-874)||(5602169-5602264)
chr1 (849-991)||(12179283-12179430)
chr1 (665-750)||(27220039-27220129)
chr1 (848-977)||(14724903-14725032)
chr1 (922-961)||(48246144-48246183)
chr1 (617-654)||(27220160-27220197)
chr1 (923-961)||(5730707-5730745)
chr1 (621-654)||(27214189-27214222)
[»] chr4 (12 HSPs)
chr4 (778-969)||(653592-653783)
chr4 (779-987)||(10119806-10120013)
chr4 (779-997)||(24490670-24490882)
chr4 (849-953)||(10318247-10318350)
chr4 (855-965)||(15451783-15451893)
chr4 (919-961)||(9763442-9763484)
chr4 (916-989)||(30563830-30563903)
chr4 (922-961)||(13711306-13711345)
chr4 (922-961)||(41393796-41393835)
chr4 (922-987)||(53798238-53798304)
chr4 (924-959)||(4206980-4207015)
chr4 (891-972)||(15499238-15499319)
[»] chr8 (10 HSPs)
chr8 (779-997)||(19430609-19430826)
chr8 (779-997)||(19566758-19566975)
chr8 (779-997)||(19436051-19436268)
chr8 (779-997)||(19572200-19572417)
chr8 (778-990)||(13584753-13584969)
chr8 (779-990)||(33616064-33616273)
chr8 (779-990)||(31031143-31031349)
chr8 (922-961)||(42514020-42514059)
chr8 (922-961)||(21641298-21641337)
chr8 (922-961)||(24885260-24885299)
[»] chr3 (18 HSPs)
chr3 (779-986)||(13022636-13022842)
chr3 (779-991)||(53120103-53120314)
chr3 (778-990)||(33088615-33088826)
chr3 (779-997)||(38436270-38436487)
chr3 (836-990)||(20810995-20811149)
chr3 (849-957)||(26962640-26962748)
chr3 (849-987)||(26929298-26929436)
chr3 (849-928)||(11777219-11777298)
chr3 (890-965)||(2616921-2616996)
chr3 (849-941)||(6025709-6025801)
chr3 (922-961)||(3476364-3476403)
chr3 (922-961)||(4117122-4117161)
chr3 (896-990)||(27604568-27604663)
chr3 (922-961)||(54271255-54271294)
chr3 (916-990)||(26707437-26707511)
chr3 (922-961)||(30338272-30338311)
chr3 (922-961)||(30341376-30341415)
chr3 (779-816)||(3448722-3448759)
[»] chr6 (16 HSPs)
chr6 (779-990)||(19478721-19478931)
chr6 (779-995)||(17289607-17289819)
chr6 (779-987)||(10485685-10485890)
chr6 (782-997)||(17280865-17281074)
chr6 (852-988)||(29326187-29326317)
chr6 (849-948)||(3902847-3902946)
chr6 (849-995)||(13660375-13660520)
chr6 (859-986)||(22713923-22714050)
chr6 (869-991)||(28696922-28697047)
chr6 (922-961)||(34142717-34142756)
chr6 (922-961)||(34155333-34155372)
chr6 (922-961)||(34376400-34376439)
chr6 (836-933)||(11956117-11956212)
chr6 (922-961)||(2817573-2817612)
chr6 (836-875)||(14450652-14450691)
chr6 (922-961)||(31982115-31982154)
[»] chr2 (5 HSPs)
chr2 (779-997)||(42915139-42915356)
chr2 (776-990)||(5089661-5089875)
chr2 (898-987)||(39959759-39959848)
chr2 (850-944)||(43111535-43111629)
chr2 (891-965)||(44683721-44683795)
[»] scaffold0011 (2 HSPs)
scaffold0011 (779-997)||(2202-2420)
scaffold0011 (779-952)||(7501-7674)
[»] scaffold0132 (2 HSPs)
scaffold0132 (779-960)||(2421-2601)
scaffold0132 (779-960)||(10381-10561)
[»] scaffold0067 (1 HSPs)
scaffold0067 (849-989)||(33368-33508)
[»] scaffold0166 (2 HSPs)
scaffold0166 (922-961)||(13158-13197)
scaffold0166 (922-961)||(18615-18654)
[»] scaffold0594 (1 HSPs)
scaffold0594 (924-961)||(8708-8745)


Alignment Details
Target: chr7 (Bit Score: 636; Significance: 0; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 636; E-Value: 0
Query Start/End: Original strand, 14 - 778
Target Start/End: Original strand, 33747048 - 33747796
Alignment:
Q  14 atatgtacacctattaatcttgtacgatcattcaacataccatgtttttgtttgatgtctacattattatacatgtacaaaagtgaacataaccatataa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  33747048 atatgtacacctattaatcttgtacgatcattcaacataccatgtttttgtttgatgtctacattgttatacatgtacaaaagtgaacataaccatataa 33747147  T
Q  114 cttgattacgtgaaggacaaaacaccaacaattggaaattattactataagcataagctgagctgtacatctccattccctttttaagctaaaagcgaca 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||    
T  33747148 cttgattacgtgaaggacaaaacaccaacaattggaaattattactataagcataagctgagttgtacatctccattccctttt-aagctgaaagcgaca 33747246  T
Q  214 aaataacttctaactcaccattgacagattggcatacacatcctgtcccaacacaaacctattttatttcctgaactccaatccatagaaattctttcta 313  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33747247 aaataacttctaactctccat-gacagattggcatacacatcctgtcgcaacacaaacctattttatttcctgaactccaatccatagaaattctttcta 33747345  T
Q  314 caaccttatcaacttctaaatcattgcctatggagcattataaaatgaaaataagtataaaggaaacacaccaaacactggactttataagaaaaccatc 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33747346 caaccttatcaacttctaaatcattgcctatggagcattataaaatgaaaataagtataaaggaaacacaccaaacactggactttataagaaaaccatc 33747445  T
Q  414 ctattgagagatgtagtatacctttccacaatagtaacttcttcctcctaagctctacaaccgtacatcaagtagatatctaggagtacaacccaaatat 513  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33747446 ctattgatagatgtagtatacctttccacaatagtaacttcttcctcctaaactctacaaccgtacatcaagtagatatctaggagtacaacccaaatat 33747545  T
Q  514 ctccgactaatcgagttgtatgccttcttgaaattgaatttcaatgaaaacattgatcttaaaatgtattatggatcttgaaatgaattagccatcatca 613  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                   ||||||||||||||    
T  33747546 ctccgactaatcgagttgtatgccttcttgaaattgaatttcaatgaaaacattgatcttaaaatgt-------------------attagccatcatca 33747626  T
Q  614 tcattgtaatgtgaaaatattgatttcattcactatctcaatgtagataaacatcaagatggaaatcacgaggctagatgacttgcattacaagta---- 709  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||        
T  33747627 tcattgtaatgtgaaaatattgatttcattcactatctcaatgtagataaacatcaagatggaaagcacgaggctagatgactttcattacaagtaatct 33747726  T
Q  710 -atgatacttaggctaaaactacaaagactaagacagttaagtgctaaactgctaatcagcataaaaatc 778  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33747727 catgatacttaggctaaaactacaaagactaagacagttaagtgctaaactgctaatcagcataaaaatc 33747796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 777 - 990
Target Start/End: Original strand, 28291840 - 28292052
Alignment:
Q  777 tctgttggaacactagttcaatctagtgagaaaattggatgagaataatcactacataggaactagtgtggttgtgtgacttaaaaatgtcccacattgg 876  Q
    |||||||||||||||||| |||||| | |||||||||||| |||| || ||| | ||| |||||||||||   ||||||||||||||||||||| |||||    
T  28291840 tctgttggaacactagttaaatctaattagaaaattggataagaaaaa-cacaatataagaactagtgtgagcgtgtgacttaaaaatgtcccatattgg 28291938  T
Q  877 ttagtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgtccttggggtacccacttttgtgaacgggtgaacgcttacaaa 976  Q
    | ||  || |||||||| ||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28291939 tgagctacaccaactagaaagtgtttatataagggtatagtgacctccaagggtgtgcccttggggtacccacttttgtgaacgggtgaacgcttacaaa 28292038  T
Q  977 aacatatatatcac 990  Q
    ||||||||||||||    
T  28292039 aacatatatatcac 28292052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 779 - 990
Target Start/End: Complemental strand, 24529183 - 24528973
Alignment:
Q  779 tgttggaacactagttcaatctagtgagaaaattggatgagaataatcactacataggaactagtgtggttgtgtgacttaaaaatgtcccacattggtt 878  Q
    |||||||||||||||| ||||||||||||||||||||| |||| || ||  | ||| |||||||||||  |||||||||||||||| ||| ||||||||     
T  24529183 tgttggaacactagttaaatctagtgagaaaattggataagaaaaa-cataatataagaactagtgtgagtgtgtgacttaaaaatatcctacattggtg 24529085  T
Q  879 agtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgtccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 978  Q
    || ||| |||||||| ||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||| ||||||| ||||||||| ||||||    
T  24529084 agccacaccaactagaaagtgtttatataagggtagagtgacctccaagggtgtgcctttggggtacccacttttatgaacggatgaacgcttgcaaaaa 24528985  T
Q  979 catatatatcac 990  Q
    ||||||||||||    
T  24528984 catatatatcac 24528973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 776 - 987
Target Start/End: Complemental strand, 7358130 - 7357920
Alignment:
Q  776 atctgttggaacactagttcaatctagtgagaaaattggatgagaataatcactacataggaactagtgtggttgtgtgacttaaaaatgtcccacattg 875  Q
    ||||||||||||||||||| |||||  |||||||||||||| |||| || ||| |   | |||||||||||   ||||||||||||||||||||| ||||    
T  7358130 atctgttggaacactagttgaatcttttgagaaaattggataagaaaaa-cacaatgcaagaactagtgtgagcgtgtgacttaaaaatgtcccatattg 7358032  T
Q  876 gttagtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgtccttggggtacccacttttgtgaacgggtgaacgcttacaa 975  Q
    || || ||| |||| ||| ||||||||||||||||| |||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||    
T  7358031 gtgagccacaccaattagaaagtgtttatataagggtagagtgacctccaaggatgtgcccttgaggtacccacttttgtgaacgggtgaacgcttacaa 7357932  T
Q  976 aaacatatatat 987  Q
    ||||||||||||    
T  7357931 aaacatatatat 7357920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 779 - 983
Target Start/End: Complemental strand, 33227113 - 33226916
Alignment:
Q  779 tgttggaacactagttcaatctagtgagaaaattggatgagaataatcactacataggaactagtgtggttgtgtgacttaaaaatgtcccacattggtt 878  Q
    |||||||||||||||| ||||||||||||||||||||| || | || ||| |  || |||||||||||  |||||||||||||||||| ||||||||||     
T  33227113 tgttggaacactagttaaatctagtgagaaaattggataaggaaaaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgttccacattggtg 33227014  T
Q  879 agtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgtccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 978  Q
    |||||| |||||||| ||||||||||||||||| ||||||||||||||| ||||| ||||       |||||||||||||||||||||||||||||||||    
T  33227013 agtcacaccaactagaaagtgtttatataagggtagagtgacctccaagagtgtgccctt-------ccacttttgtgaacgggtgaacgcttacaaaaa 33226921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 779 - 927
Target Start/End: Complemental strand, 9974062 - 9973915
Alignment:
Q  779 tgttggaacactagttcaatctagtgagaaaattggatgagaataatcactacataggaactagtgtggttgtgtgacttaaaaatgtcccacattggtt 878  Q
    |||||||||||||||| ||||||||||||||||||||| |||| || ||| |  || |||||| ||||  |||||||||||||||||||||||||||||     
T  9974062 tgttggaacactagttgaatctagtgagaaaattggataagaaaaa-cacaatgtaagaactaatgtgagtgtgtgacttaaaaatgtcccacattggtg 9973964  T
Q  879 agtcaccccaactagtaagtgtttatataagggaagagtgacctccaag 927  Q
    || ||| |||||||| || |||| ||||||||| |||||||||||||||    
T  9973963 agccacaccaactagaaattgttaatataagggtagagtgacctccaag 9973915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 849 - 938
Target Start/End: Complemental strand, 47762436 - 47762348
Alignment:
Q  849 tgtgtgacttaaaaatgtcccacattggttagtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgtcctt 938  Q
    |||||||||||||||||| ||||||| || || ||| ||||||||||| ||||||||||| ||  | ||||||||||||| |||| ||||    
T  47762436 tgtgtgacttaaaaatgttccacattagtgagccacaccaactagtaaatgtttatataaagg-tgggtgacctccaaggatgtgccctt 47762348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 778 - 821
Target Start/End: Complemental strand, 10437457 - 10437414
Alignment:
Q  778 ctgttggaacactagttcaatctagtgagaaaattggatgagaa 821  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||    
T  10437457 ctgttggaacactagttgaatctagtgagaaaattggataagaa 10437414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 778 - 821
Target Start/End: Complemental strand, 10451167 - 10451124
Alignment:
Q  778 ctgttggaacactagttcaatctagtgagaaaattggatgagaa 821  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||    
T  10451167 ctgttggaacactagttgaatctagtgagaaaattggataagaa 10451124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 922 - 961
Target Start/End: Original strand, 16538845 - 16538884
Alignment:
Q  922 tccaagggtgtgtccttggggtacccacttttgtgaacgg 961  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  16538845 tccaagggtgtgcccttggggtacccacttttgtgaacgg 16538884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 922 - 961
Target Start/End: Complemental strand, 16626817 - 16626778
Alignment:
Q  922 tccaagggtgtgtccttggggtacccacttttgtgaacgg 961  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  16626817 tccaagggtgtgcccttggggtacccacttttgtgaacgg 16626778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 922 - 961
Target Start/End: Complemental strand, 17496075 - 17496036
Alignment:
Q  922 tccaagggtgtgtccttggggtacccacttttgtgaacgg 961  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  17496075 tccaagggtgtgcccttggggtacccacttttgtgaacgg 17496036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 922 - 961
Target Start/End: Original strand, 17557139 - 17557178
Alignment:
Q  922 tccaagggtgtgtccttggggtacccacttttgtgaacgg 961  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  17557139 tccaagggtgtgcccttggggtacccacttttgtgaacgg 17557178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 922 - 961
Target Start/End: Original strand, 32212137 - 32212176
Alignment:
Q  922 tccaagggtgtgtccttggggtacccacttttgtgaacgg 961  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  32212137 tccaagggtgtgtgcttggggtacccacttttgtgaacgg 32212176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 922 - 961
Target Start/End: Complemental strand, 43893517 - 43893478
Alignment:
Q  922 tccaagggtgtgtccttggggtacccacttttgtgaacgg 961  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  43893517 tccaagggtgtgcccttggggtacccacttttgtgaacgg 43893478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 859 - 990
Target Start/End: Original strand, 7874443 - 7874575
Alignment:
Q  859 aaaaatgtcccacattggttagtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgtccttggggtacccacttttgtg-- 956  Q
    |||||||||||||||||| ||| ||  ||  |||||| | ||||||||||| |  | |||||||||||| ||||| || ||  |||||||||||| ||      
T  7874443 aaaaatgtcccacattgggtagacatgccctctagtacgagtttatataagtgggg-gtgacctccaagagtgtgcccctgatgtacccacttttttgcg 7874541  T
Q  957 aacgggtgaacgcttacaaaaacatatatatcac 990  Q
    ||||||||| ||||||| |||| |||||||||||    
T  7874542 aacgggtgagcgcttacgaaaaaatatatatcac 7874575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 922 - 961
Target Start/End: Complemental strand, 12935059 - 12935020
Alignment:
Q  922 tccaagggtgtgtccttggggtacccacttttgtgaacgg 961  Q
    ||||| |||||| |||||||||||||||||||||||||||    
T  12935059 tccaatggtgtgcccttggggtacccacttttgtgaacgg 12935020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 894 - 953
Target Start/End: Original strand, 21235491 - 21235550
Alignment:
Q  894 taagtgtttatataagggaagagtgacctccaagggtgtgtccttggggtacccactttt 953  Q
    |||||||||||||||| || | |||||||||||||||||  |||| ||||| ||||||||    
T  21235491 taagtgtttatataagtgaggggtgacctccaagggtgttccctttgggtatccactttt 21235550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 203; Significance: 1e-110; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 779 - 997
Target Start/End: Original strand, 13581981 - 13582199
Alignment:
Q  779 tgttggaacactagttcaatctagtgagaaaattggatgagaataatcactacataggaactagtgtggttgtgtgacttaaaaatgtcccacattggtt 878  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  13581981 tgttggaacactagttcaatctagtgagaaaattggatgagaataatcactacataagaactagtgtggttatgtgacttaaaaatgtcccacattggtt 13582080  T
Q  879 agtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgtccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 978  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  13582081 agtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgcccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 13582180  T
Q  979 catatatatcacgtgcgcg 997  Q
    ||||||||||||| |||||    
T  13582181 catatatatcacgcgcgcg 13582199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 778 - 996
Target Start/End: Complemental strand, 7805868 - 7805650
Alignment:
Q  778 ctgttggaacactagttcaatctagtgagaaaattggatgagaataatcactacataggaactagtgtggttgtgtgacttaaaaatgtcccacattggt 877  Q
    ||||||||||||||||||||||||||||||||||||  |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7805868 ctgttggaacactagttcaatctagtgagaaaattgattgaggataattactacataggaactagtgtggttgtgtgacttaaaaatgtcccacattggt 7805769  T
Q  878 tagtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgtccttggggtacccacttttgtgaacgggtgaacgcttacaaaa 977  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  7805768 tagtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgcccttggggtacccacttttgtgaacgggtgaacgcttacaaaa 7805669  T
Q  978 acatatatatcacgtgcgc 996  Q
    | || ||||||||| ||||    
T  7805668 atatgtatatcacgcgcgc 7805650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 177; E-Value: 7e-95
Query Start/End: Original strand, 779 - 987
Target Start/End: Complemental strand, 14374917 - 14374710
Alignment:
Q  779 tgttggaacactagttcaatctagtgagaaaattggatgagaataatcactacataggaactagtgtggttgtgtgacttaaaaatgtcccacattggtt 878  Q
    ||||||||||||||||||||||||||||||  |||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  14374917 tgttggaacactagttcaatctagtgagaagtttggatgagaataagcactac-taagaactagtgtggttgtgtgacttaaaaatgtcccacattggtt 14374819  T
Q  879 agtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgtccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 978  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  14374818 agtcaccccaactagaaagtgtttatataagggaagagtgacctccaagggtgtgcccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 14374719  T
Q  979 catatatat 987  Q
    |||||||||    
T  14374718 catatatat 14374710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 890 - 970
Target Start/End: Complemental strand, 31987430 - 31987350
Alignment:
Q  890 ctagtaagtgtttatataagggaagagtgacctccaagggtgtgtccttggggtacccacttttgtgaacgggtgaacgct 970  Q
    |||||||||||||||||||| | || ||||||||||||| |||  |||||||||||||| ||||| ||||| |||| ||||    
T  31987430 ctagtaagtgtttatataagcggagggtgacctccaaggatgtacccttggggtacccatttttgcgaacgagtgagcgct 31987350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 853 - 977
Target Start/End: Original strand, 9361776 - 9361898
Alignment:
Q  853 tgacttaaaaatgtcccacattggttagtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgtccttggggtacccacttt 952  Q
    |||||||||||||| |||||||||  || ||  | | ||||||||| |||||||||| | || ||||  |||||||||||| ||||| |||| |||||||    
T  9361776 tgacttaaaaatgtgccacattggagagacatactacctagtaagtatttatataagtggagggtga--tccaagggtgtgcccttgtggtatccacttt 9361873  T
Q  953 tgtgaacgggtgaacgcttacaaaa 977  Q
    ||  ||||| |||||||||| ||||    
T  9361874 tgcaaacggatgaacgcttagaaaa 9361898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 922 - 961
Target Start/End: Original strand, 24776231 - 24776270
Alignment:
Q  922 tccaagggtgtgtccttggggtacccacttttgtgaacgg 961  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  24776231 tccaagggtgtgcccttggggtacccacttttgtgaacgg 24776270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 922 - 961
Target Start/End: Complemental strand, 36254492 - 36254453
Alignment:
Q  922 tccaagggtgtgtccttggggtacccacttttgtgaacgg 961  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  36254492 tccaagggtgtgcccttggggtacccacttttgtgaacgg 36254453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 922 - 961
Target Start/End: Original strand, 24770777 - 24770816
Alignment:
Q  922 tccaagggtgtgtccttggggtacccacttttgtgaacgg 961  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  24770777 tccaagggtgtgcccttggggtacccacttttgttaacgg 24770816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 779 - 996
Target Start/End: Complemental strand, 10106835 - 10106618
Alignment:
Q  779 tgttggaacactagttcaatctagtgagaaaattggatgagaataatcactacataggaactagtgtggttgtgtgacttaaaaatgtcccacattggtt 878  Q
    |||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10106835 tgttggaacactagttcaatctagtgagaaaattgattgagaataattactacataggaactagtgtggttgtgtgacttaaaaatgtcccacattggtt 10106736  T
Q  879 agtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgtccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 978  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  10106735 agtcaccccaactagtaagtgtttatataaggggagagtgacctccaagggtgtgcccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 10106636  T
Q  979 catatatatcacgtgcgc 996  Q
    ||||||||||||| ||||    
T  10106635 catatatatcacgcgcgc 10106618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 779 - 991
Target Start/End: Complemental strand, 13891598 - 13891387
Alignment:
Q  779 tgttggaacactagttcaatctagtgagaaaattggatgagaataatcactacataggaactagtgtggttgtgtgacttaaaaatgtcccacattggtt 878  Q
    |||||||||||||||| ||||||||||||||||||||| |||| || ||| | ||| ||||||||||   |||||||||||||||||||||||||||||     
T  13891598 tgttggaacactagttaaatctagtgagaaaattggataagaaaaa-cacaatataagaactagtgtaagtgtgtgacttaaaaatgtcccacattggtg 13891500  T
Q  879 agtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgtccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 978  Q
    || ||| |||||||| |||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||| |||||||||||    
T  13891499 agccacaccaactagaaagtgtttatataagggaagagtgacctccaaggatgtgcccttgaggtacccacttttgtgaacgggtgaatgcttacaaaaa 13891400  T
Q  979 catatatatcacg 991  Q
    |||||||||||||    
T  13891399 catatatatcacg 13891387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 779 - 988
Target Start/End: Complemental strand, 38734919 - 38734711
Alignment:
Q  779 tgttggaacactagttcaatctagtgagaaaattggatgagaataatcactacataggaactagtgtggttgtgtgacttaaaaatgtcccacattggtt 878  Q
    |||||||||||||||| ||||||||||||||||||||| |||| || ||| | ||| |||||||||||  |||||||||||||||||||||| ||||||     
T  38734919 tgttggaacactagttaaatctagtgagaaaattggataagaaaaa-cacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccatattggtg 38734821  T
Q  879 agtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgtccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 978  Q
    || ||| |||||||| ||||||||||||||||| |||||||||| ||| |||||| |||| || ||||||||||||||||||||||||||||||||||||    
T  38734820 agccacaccaactagaaagtgtttatataagggtagagtgaccttcaaaggtgtgcccttaggatacccacttttgtgaacgggtgaacgcttacaaaaa 38734721  T
Q  979 catatatatc 988  Q
    ||||||||||    
T  38734720 catatatatc 38734711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 779 - 990
Target Start/End: Original strand, 26650428 - 26650637
Alignment:
Q  779 tgttggaacactagttcaatctagtgagaaaattggatgagaataatcactacataggaactagtgtggttgtgtgacttaaaaatgtcccacattggtt 878  Q
    |||||||||||||||| ||||||||||||||||||||| |||| || ||| |  || |||||||||||  |||||||||||||||||||||||||||||     
T  26650428 tgttggaacactagttaaatctagtgagaaaattggataagaaaaa-cacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtg 26650526  T
Q  879 agtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgtccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 978  Q
    || |||  ||||||| ||||||| ||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26650527 agccacatcaactagaaagtgtt-atataagggtagagtgacctccaaggatgtgcccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 26650625  T
Q  979 catatatatcac 990  Q
     |||||||||||    
T  26650626 tatatatatcac 26650637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 105; E-Value: 7e-52
Query Start/End: Original strand, 778 - 961
Target Start/End: Complemental strand, 31289548 - 31289367
Alignment:
Q  778 ctgttggaacactagttcaatctagtgagaaaattggatgagaataatcactacataggaactagtgtggttgtgtgacttaaaaatgtcccacattggt 877  Q
    ||||||||||||||||| ||||||||||||||||||||| |||| |  ||| |  || |||||||||||  |||||||||||||||||||||||||||||    
T  31289548 ctgttggaacactagttgaatctagtgagaaaattggataagaaaa--cacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacattggt 31289451  T
Q  878 tagtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgtccttggggtacccacttttgtgaacgg 961  Q
     || ||| |||||||| ||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||| |||||    
T  31289450 gagccacaccaactagaaagtgtttatataagggtagagtgacctccaagggtgtgcccttagggtacccacttttgtaaacgg 31289367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 779 - 987
Target Start/End: Original strand, 39746674 - 39746880
Alignment:
Q  779 tgttggaacactagttcaatctagtgagaaaattggatgagaataatcactacataggaactagtgtggttgtgtgacttaaaaatgtcccacattggtt 878  Q
    |||||||||||||||| ||||||||||||||||||||| |||| || ||| |  || |||||||||||  ||||||||||||||||||  || ||||||     
T  39746674 tgttggaacactagttgaatctagtgagaaaattggataagaaaaa-cacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtttcatattggtg 39746772  T
Q  879 agtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgtccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 978  Q
    || ||| |||||||| ||||||||||||||||| ||||| |||||||||| |||| ||||  |||||||||||||||||||| |||||||||||||||||    
T  39746773 agccacaccaactagaaagtgtttatataagggtagagtaacctccaaggatgtgcccttaaggtacccacttttgtgaacgagtgaacgcttacaaaaa 39746872  T
Q  979 catatatat 987  Q
     ||||||||    
T  39746873 -atatatat 39746880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 886 - 989
Target Start/End: Original strand, 19406287 - 19406390
Alignment:
Q  886 ccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgtccttggggtacccacttttgtgaacgggtgaacgcttacaaaaacatatat 985  Q
    |||||||| ||||||||||||||||| ||||||||| ||||||||||| | |||||||||||||||| |||||||| |||||||||||||||||||||||    
T  19406287 ccaactagaaagtgtttatataagggtagagtgacccccaagggtgtgcctttggggtacccactttcgtgaacggatgaacgcttacaaaaacatatat 19406386  T
Q  986 atca 989  Q
    ||||    
T  19406387 atca 19406390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 779 - 924
Target Start/End: Complemental strand, 14582541 - 14582397
Alignment:
Q  779 tgttggaacactagttcaatctagtgagaaaattggatgagaataatcactacataggaactagtgtggttgtgtgacttaaaaatgtcccacattggtt 878  Q
    |||||||||||||||| ||||||||||||||||||||| |||| || ||| |  || |||||||||||  |||||||||||||||||||||||||||||     
T  14582541 tgttggaacactagttaaatctagtgagaaaattggataagaaaaa-cacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtg 14582443  T
Q  879 agtcaccccaactagtaagtgtttatataagggaagagtgacctcc 924  Q
    |  ||| |||||||| || | |||||||||||| ||||||||||||    
T  14582442 aaccacaccaactagaaattttttatataagggtagagtgacctcc 14582397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 778 - 874
Target Start/End: Original strand, 5602169 - 5602264
Alignment:
Q  778 ctgttggaacactagttcaatctagtgagaaaattggatgagaataatcactacataggaactagtgtggttgtgtgacttaaaaatgtcccacatt 874  Q
    ||||||||||||||||| ||| ||||||||||||||||| |||| || ||| |  || |||||||||||  ||||||||||||||||||||||||||    
T  5602169 ctgttggaacactagttgaatttagtgagaaaattggataagaa-aaacacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacatt 5602264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 849 - 991
Target Start/End: Complemental strand, 12179430 - 12179283
Alignment:
Q  849 tgtgtgacttaaaaatgtcccacattggttagtcacc----ccaactagtaagtgtttatataagggaagag-tgacctccaagggtgtgtccttggggt 943  Q
    |||||||||||||||| ||| |||||||| || |||     |||||||| |||||||||||||||||  | | |||||| |||| ||||| ||||||| |    
T  12179430 tgtgtgacttaaaaatatcctacattggtgagccacgtacaccaactagcaagtgtttatataagggtggggatgacctgcaagtgtgtgcccttgggat 12179331  T
Q  944 acccacttttgtgaacgggtgaacgcttacaaaaacatatatatcacg 991  Q
    ||||||| ||||||||| |||| | |||| ||||| ||||||||||||    
T  12179330 acccactgttgtgaacgagtgagcacttagaaaaatatatatatcacg 12179283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 665 - 750
Target Start/End: Complemental strand, 27220129 - 27220039
Alignment:
Q  665 catcaagatggaaatcacgaggctagatgacttgcattacaagtaat-----gatacttaggctaaaactacaaagactaagacagttaag 750  Q
    |||||||||||||| | | ||||||||||||||||||||||||||||     || || ||||||||||| ||||||||||| |||| ||||    
T  27220129 catcaagatggaaagctcaaggctagatgacttgcattacaagtaatctcaagagacataggctaaaacaacaaagactaaaacagctaag 27220039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 848 - 977
Target Start/End: Complemental strand, 14725032 - 14724903
Alignment:
Q  848 ttgtgtgacttaaaaatgtcccacattggttagtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgtccttggggtaccc 947  Q
    |||| ||||||| ||| |||||||||| |  |||||  | | || ||||||||||||||||| |  | ||||||| ||| | |||| | |||||||||||    
T  14725032 ttgtatgacttataaaggtcccacatttgagagtcatactacctggtaagtgtttatataagtggggggtgacctacaaagatgtgccattggggtaccc 14724933  T
Q  948 acttttgtgaacgggtgaacgcttacaaaa 977  Q
    ||||||| |||||||||| |||||| ||||    
T  14724932 acttttgggaacgggtgagcgcttagaaaa 14724903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 922 - 961
Target Start/End: Original strand, 48246144 - 48246183
Alignment:
Q  922 tccaagggtgtgtccttggggtacccacttttgtgaacgg 961  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  48246144 tccaagggtgtgcccttggggtacccacttttgtgaacgg 48246183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 617 - 654
Target Start/End: Complemental strand, 27220197 - 27220160
Alignment:
Q  617 ttgtaatgtgaaaatattgatttcattcactatctcaa 654  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  27220197 ttgtaatgtgaaaatattgatttcattcattatctcaa 27220160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 923 - 961
Target Start/End: Complemental strand, 5730745 - 5730707
Alignment:
Q  923 ccaagggtgtgtccttggggtacccacttttgtgaacgg 961  Q
    ||||||||||| ||||||||||| |||||||||||||||    
T  5730745 ccaagggtgtgcccttggggtacacacttttgtgaacgg 5730707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 621 - 654
Target Start/End: Complemental strand, 27214222 - 27214189
Alignment:
Q  621 aatgtgaaaatattgatttcattcactatctcaa 654  Q
    ||||||||||||||||||||||||| ||||||||    
T  27214222 aatgtgaaaatattgatttcattcattatctcaa 27214189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 176; Significance: 3e-94; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 176; E-Value: 3e-94
Query Start/End: Original strand, 778 - 969
Target Start/End: Complemental strand, 653783 - 653592
Alignment:
Q  778 ctgttggaacactagttcaatctagtgagaaaattggatgagaataatcactacataggaactagtgtggttgtgtgacttaaaaatgtcccacattggt 877  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  653783 ctgttggaacactagtttaatctagtgagaaaattggatgagaataatcactacataagaactagtgtggttatgtgacttaaaaatgtcccacattggt 653684  T
Q  878 tagtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgtccttggggtacccacttttgtgaacgggtgaacgc 969  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  653683 tagtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgcccttggggtacccacttttgtgaacgggtgaacgc 653592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 779 - 987
Target Start/End: Original strand, 10119806 - 10120013
Alignment:
Q  779 tgttggaacactagttcaatctagtgagaaaattggatgagaataatcactacataggaactagtgtggttgtgtgacttaaaaatgtcccacattggtt 878  Q
    |||||||||||||||| ||||| ||||||||||||||| |||| || ||| |  || |||||||||||  |||||||||||||||||||||||||||||     
T  10119806 tgttggaacactagttgaatctcgtgagaaaattggataagaaaaa-cacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtg 10119904  T
Q  879 agtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgtccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 978  Q
    || ||| |||||||| ||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  10119905 agccacaccaactagaaagtgtttatataagggtagagtgacctccaagggtgtacccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 10120004  T
Q  979 catatatat 987  Q
    |||||||||    
T  10120005 catatatat 10120013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 779 - 997
Target Start/End: Complemental strand, 24490882 - 24490670
Alignment:
Q  779 tgttggaacactagttcaatctagtgagaaaattggatgagaataatcactacataggaactagtgtggttgtgtgacttaaaaatgtcccacattggtt 878  Q
    |||||||||||||||| ||||||||||||||||||||| |||| || ||| |  || |||||||||||    ||| |||||||||||||||| |||||      
T  24490882 tgttggaacactagttaaatctagtgagaaaattggat-agaaaaa-cacaatgtaagaactagtgtg----tgtaacttaaaaatgtcccatattggag 24490789  T
Q  879 agtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgtccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 978  Q
    || ||| |||||||| ||||||||||||||||| ||||||||||||||||||||| ||||| |||||| || |||| |||||||||| | |||| |||||    
T  24490788 agccacaccaactagcaagtgtttatataagggtagagtgacctccaagggtgtgcccttgaggtacctacatttgcgaacgggtgagcacttagaaaaa 24490689  T
Q  979 catatatatcacgtgcgcg 997  Q
    |||||||||||||||||||    
T  24490688 catatatatcacgtgcgcg 24490670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 849 - 953
Target Start/End: Original strand, 10318247 - 10318350
Alignment:
Q  849 tgtgtgacttaaaaatgtcccacattggttagtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgtccttggggtaccca 948  Q
    ||||||| ||||||||||| ||||||| | || ||| |||||||  ||||| |||||||||||  |  ||||||||||||||||| ||||||||||||||    
T  10318247 tgtgtgatttaaaaatgtctcacattgatgagccacaccaactaacaagtgattatataagggtgggatgacctccaagggtgtg-ccttggggtaccca 10318345  T
Q  949 ctttt 953  Q
    |||||    
T  10318346 ctttt 10318350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 855 - 965
Target Start/End: Complemental strand, 15451893 - 15451783
Alignment:
Q  855 acttaaaaatgtcccacattggttagtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgtccttggggtacccacttttg 954  Q
    ||||||||||||||||||||||   || |  | | |||||||||||||||||||| |  || || |||  ||||||||| ||||||||||||||||||||    
T  15451893 acttaaaaatgtcccacattggagggtgatactacctagtaagtgtttatataagtggggaatggcctaaaagggtgtgcccttggggtacccacttttg 15451794  T
Q  955 tgaacgggtga 965  Q
     ||||||||||    
T  15451793 cgaacgggtga 15451783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 919 - 961
Target Start/End: Original strand, 9763442 - 9763484
Alignment:
Q  919 acctccaagggtgtgtccttggggtacccacttttgtgaacgg 961  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  9763442 acctccaagggtgtgcccttggggtacccacttttgtgaacgg 9763484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 916 - 989
Target Start/End: Original strand, 30563830 - 30563903
Alignment:
Q  916 gtgacctccaagggtgtgtccttggggtacccacttttgtgaacgggtgaacgcttacaaaaacatatatatca 989  Q
    |||||||||||||||||| |||||||||| ||||||||  |||| ||||  |||||| ||||| ||||||||||    
T  30563830 gtgacctccaagggtgtgcccttggggtatccacttttacgaacaggtgcgcgcttagaaaaatatatatatca 30563903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 922 - 961
Target Start/End: Complemental strand, 13711345 - 13711306
Alignment:
Q  922 tccaagggtgtgtccttggggtacccacttttgtgaacgg 961  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  13711345 tccaagggtgtgcccttggggtacccacttttgtgaacgg 13711306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 922 - 961
Target Start/End: Complemental strand, 41393835 - 41393796
Alignment:
Q  922 tccaagggtgtgtccttggggtacccacttttgtgaacgg 961  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  41393835 tccaagggtgtgcccttggggtacccacttttgtgaacgg 41393796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 922 - 987
Target Start/End: Complemental strand, 53798304 - 53798238
Alignment:
Q  922 tccaagggtgtgtccttggggtacccacttttgtgaacgg-gtgaacgcttacaaaaacatatatat 987  Q
    |||||||||||| | ||||||||| ||||||||||||||| |||||||||| ||||||  |||||||    
T  53798304 tccaagggtgtgcctttggggtacacacttttgtgaacggagtgaacgcttgcaaaaaattatatat 53798238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 924 - 959
Target Start/End: Complemental strand, 4207015 - 4206980
Alignment:
Q  924 caagggtgtgtccttggggtacccacttttgtgaac 959  Q
    |||||||||| |||||||||||||||||||||||||    
T  4207015 caagggtgtgcccttggggtacccacttttgtgaac 4206980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 891 - 972
Target Start/End: Complemental strand, 15499319 - 15499238
Alignment:
Q  891 tagtaagtgtttatataagggaagagtgacctccaagggtgtgtccttggggtacccacttttgtgaacgggtgaacgctta 972  Q
    ||||||||||||||||||| |  || || |||  ||| ||||| |||||||||||||||||||  |||||||| ||| ||||    
T  15499319 tagtaagtgtttatataagtggggaatggcctaaaagagtgtgcccttggggtacccacttttacgaacgggtaaacactta 15499238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 147; Significance: 6e-77; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 147; E-Value: 6e-77
Query Start/End: Original strand, 779 - 997
Target Start/End: Complemental strand, 19430826 - 19430609
Alignment:
Q  779 tgttggaacactagttcaatctagtgagaaaattggatgagaataatcactacataggaactagtgtggttgtgtgacttaaaaatgtcccacattggtt 878  Q
    |||||||||||||||| ||||||||||||||||||||| |||| || ||| | ||| |||||||||||  |||||||||||||||||||||||||||||     
T  19430826 tgttggaacactagttaaatctagtgagaaaattggataagaaaaa-cacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtg 19430728  T
Q  879 agtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgtccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 978  Q
    || ||| |||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  19430727 agccacaccaactagaaagtgtttatataagggtagagtgacctccaagggtgtgcccttgggatacccacttttgtgaacgggtgaacgcttacaaaaa 19430628  T
Q  979 catatatatcacgtgcgcg 997  Q
    ||||||||||||| |||||    
T  19430627 catatatatcacgcgcgcg 19430609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 147; E-Value: 6e-77
Query Start/End: Original strand, 779 - 997
Target Start/End: Complemental strand, 19566975 - 19566758
Alignment:
Q  779 tgttggaacactagttcaatctagtgagaaaattggatgagaataatcactacataggaactagtgtggttgtgtgacttaaaaatgtcccacattggtt 878  Q
    |||||||||||||||| ||||||||||||||||||||| |||| || ||| | ||| |||||||||||  |||||||||||||||||||||||||||||     
T  19566975 tgttggaacactagttaaatctagtgagaaaattggataagaaaaa-cacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtg 19566877  T
Q  879 agtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgtccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 978  Q
    || ||| |||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  19566876 agccacaccaactagaaagtgtttatataagggtagagtgacctccaagggtgtgcccttgggatacccacttttgtgaacgggtgaacgcttacaaaaa 19566777  T
Q  979 catatatatcacgtgcgcg 997  Q
    ||||||||||||| |||||    
T  19566776 catatatatcacgcgcgcg 19566758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 779 - 997
Target Start/End: Complemental strand, 19436268 - 19436051
Alignment:
Q  779 tgttggaacactagttcaatctagtgagaaaattggatgagaataatcactacataggaactagtgtggttgtgtgacttaaaaatgtcccacattggtt 878  Q
    |||||||||||||||| ||||||||||||||||||||| |||| || ||| | ||| |||||||||||  |||||||||||||||||||||||||||||     
T  19436268 tgttggaacactagttaaatctagtgagaaaattggataagaaaaa-cacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtg 19436170  T
Q  879 agtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgtccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 978  Q
    || ||| |||||||| ||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  19436169 agccacaccaactagaaagtgtttatataagggtaaagtgacctccaagggtgtgcccttggggtacccacttttgtgaactggtgaacgcttacaaaaa 19436070  T
Q  979 catatatatcacgtgcgcg 997  Q
    ||||||||||||| |||||    
T  19436069 catatatatcacgcgcgcg 19436051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 779 - 997
Target Start/End: Complemental strand, 19572417 - 19572200
Alignment:
Q  779 tgttggaacactagttcaatctagtgagaaaattggatgagaataatcactacataggaactagtgtggttgtgtgacttaaaaatgtcccacattggtt 878  Q
    |||||||||||||||| ||||||||||||||||||||| |||| || ||| | ||| |||||||||||  |||||||||||||||||||||||||||||     
T  19572417 tgttggaacactagttaaatctagtgagaaaattggataagaaaaa-cacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtg 19572319  T
Q  879 agtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgtccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 978  Q
    || ||| |||||||| ||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  19572318 agccacaccaactagaaagtgtttatataagggtaaagtgacctccaagggtgtgcccttggggtacccacttttgtgaactggtgaacgcttacaaaaa 19572219  T
Q  979 catatatatcacgtgcgcg 997  Q
    ||||||||||||| |||||    
T  19572218 catatatatcacgcgcgcg 19572200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 778 - 990
Target Start/End: Complemental strand, 13584969 - 13584753
Alignment:
Q  778 ctgttggaacactagttcaatctagtgagaaaattggatgagaataat----cactacataggaactagtgtggttgtgtgacttaaaaatgtcccacat 873  Q
    ||||||||||||||||| ||||||||||||||||||||| |||| ||     ||| | ||| ||| |||||||   |||||| |||||||||||||||||    
T  13584969 ctgttggaacactagttaaatctagtgagaaaattggataagaaaaaaaaaacacaatataagaattagtgtgagcgtgtgatttaaaaatgtcccacat 13584870  T
Q  874 tggttagtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgtccttggggtacccacttttgtgaacgggtgaacgcttac 973  Q
    |||| || ||| |||||||| ||||||||||||| ||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13584869 tggtgagccacaccaactagaaagtgtttatatacgggtagagtgacatccaagggtgtgcccttggggtacccacttttgtgaacgggtgaacgcttac 13584770  T
Q  974 aaaaacatatatatcac 990  Q
    |||||||||||||||||    
T  13584769 aaaaacatatatatcac 13584753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 779 - 990
Target Start/End: Original strand, 33616064 - 33616273
Alignment:
Q  779 tgttggaacactagttcaatctagtgagaaaattggatgagaataatcactacataggaactagtgtggttgtgtgacttaaaaatgtcccacattggtt 878  Q
    |||||||||| ||||| ||||||||||||||||||||| |||| ||| || | ||| |||||||||||  | |||| |||||||||||| |||||||||     
T  33616064 tgttggaacattagttaaatctagtgagaaaattggataagaaaaat-acaatataagaactagtgtgagtatgtggcttaaaaatgtctcacattggtg 33616162  T
Q  879 agtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgtccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 978  Q
    || ||| |||||||| ||||||||||||||||| ||||| ||||||||||||||| |||| |||||||||||||| ||||||| ||||||||||||||||    
T  33616163 agccacaccaactagaaagtgtttatataagggtagagtaacctccaagggtgtgccctt-gggtacccacttttatgaacggatgaacgcttacaaaaa 33616261  T
Q  979 catatatatcac 990  Q
    ||||||||||||    
T  33616262 catatatatcac 33616273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 779 - 990
Target Start/End: Complemental strand, 31031349 - 31031143
Alignment:
Q  779 tgttggaacactagttcaatctagtgagaaaattggatgagaataatcactacataggaactagtgtggttgtgtgacttaaaaatgtcccacattggtt 878  Q
    |||||||||||||||| |||||| |||||||||||||| |||| || |||   ||| |||||||||||  ||||||||||||||||||| |||||||||     
T  31031349 tgttggaacactagttaaatctaatgagaaaattggataagaaaaa-cacattataagaactagtgtgagtgtgtgacttaaaaatgtctcacattggtg 31031251  T
Q  879 agtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgtccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 978  Q
    || ||| |||||||| |||| |  ||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||  |||||||||||||||||    
T  31031250 agccacaccaactagaaagtat--atataagggtagagtgacctccaaggatgtgcccttggggtacccacttttgtgaac--gtgaacgcttacaaaaa 31031155  T
Q  979 catatatatcac 990  Q
    ||||||||||||    
T  31031154 catatatatcac 31031143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 922 - 961
Target Start/End: Original strand, 42514020 - 42514059
Alignment:
Q  922 tccaagggtgtgtccttggggtacccacttttgtgaacgg 961  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  42514020 tccaagggtgtgtccttggggtacccacttttgtgaacgg 42514059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 922 - 961
Target Start/End: Original strand, 21641298 - 21641337
Alignment:
Q  922 tccaagggtgtgtccttggggtacccacttttgtgaacgg 961  Q
    |||||||||||| |||||||||| ||||||||||||||||    
T  21641298 tccaagggtgtgcccttggggtatccacttttgtgaacgg 21641337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 922 - 961
Target Start/End: Complemental strand, 24885299 - 24885260
Alignment:
Q  922 tccaagggtgtgtccttggggtacccacttttgtgaacgg 961  Q
    |||||||||||  |||||||||||||||||||||||||||    
T  24885299 tccaagggtgtacccttggggtacccacttttgtgaacgg 24885260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 140; Significance: 9e-73; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 140; E-Value: 9e-73
Query Start/End: Original strand, 779 - 986
Target Start/End: Complemental strand, 13022842 - 13022636
Alignment:
Q  779 tgttggaacactagttcaatctagtgagaaaattggatgagaataatcactacataggaactagtgtggttgtgtgacttaaaaatgtcccacattggtt 878  Q
    |||||||||||||||| ||||||||||||||||||||| |||| || ||| | ||| |||||||||||  |||||||||||||||||||||||||||||     
T  13022842 tgttggaacactagttaaatctagtgagaaaattggataagaaaaa-cacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtg 13022744  T
Q  879 agtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgtccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 978  Q
    || ||| |||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  13022743 agccacaccaattagaaagtgtttatataagggaagagtgacctccaagggtgtgaccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 13022644  T
Q  979 catatata 986  Q
     |||||||    
T  13022643 gatatata 13022636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 779 - 991
Target Start/End: Complemental strand, 53120314 - 53120103
Alignment:
Q  779 tgttggaacactagttcaatctagtgagaaaattggatgagaataatcactacataggaactagtgtggttgtgtgacttaaaaatgtcccacattggtt 878  Q
    |||||||||||||||| ||||||||||||||||||||| |||| || ||| |  || |||||||||||  |||||||||||||||||||||||||||||     
T  53120314 tgttggaacactagttaaatctagtgagaaaattggataagaaaaa-cacgatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtg 53120216  T
Q  879 agtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgtccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 978  Q
    || ||| |||||||| ||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  53120215 agccacaccaactagaaagtgtttatataagggtacagtgacctccaagggtgtgcccttggggtacccacttttgtgaacaggtgaacgcttacaaaaa 53120116  T
Q  979 catatatatcacg 991  Q
     ||||||||||||    
T  53120115 tatatatatcacg 53120103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 778 - 990
Target Start/End: Original strand, 33088615 - 33088826
Alignment:
Q  778 ctgttggaacactagttcaatctagtgagaaaattggatgagaataatcactacataggaactagtgtggttgtgtgacttaaaaatgtcccacattggt 877  Q
    ||||||||||||||||| ||||||||||||||||||||| |||| || ||  |  || |||||||||||  |||||||||||||||||||||||||||||    
T  33088615 ctgttggaacactagttaaatctagtgagaaaattggataagaaaaa-cataatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacattggt 33088713  T
Q  878 tagtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgtccttggggtacccacttttgtgaacgggtgaacgcttacaaaa 977  Q
     || ||  |||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||    
T  33088714 gagccaaaccaactagaaagtgtttatataagggtagagtgacctccaagggtgtgcccttggggtacccacttttataaacgggtgaacgcttacaaaa 33088813  T
Q  978 acatatatatcac 990  Q
    |||||||||||||    
T  33088814 acatatatatcac 33088826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 779 - 997
Target Start/End: Original strand, 38436270 - 38436487
Alignment:
Q  779 tgttggaacactagttcaatctagtgagaaaattggatgagaataatcactacataggaactagtgtggttgtgtgacttaaaaatgtcccacattggtt 878  Q
    ||||||| ||| |||| ||||||||||||||||||||| |||| || ||| |  || |||||||||||   ||||||||||||||||||||||||||||     
T  38436270 tgttggagcaccagttaaatctagtgagaaaattggataagaaaaa-cacaatgtaagaactagtgtgagcgtgtgacttaaaaatgtcccacattggtg 38436368  T
Q  879 agtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgtccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 978  Q
    || |||  ||||||  ||||||||||||||||| ||||||||| |||| ||||||  ||| |||||||||||||||||||||||||||||||||||||||    
T  38436369 agccacatcaactaaaaagtgtttatataagggtagagtgaccaccaaaggtgtgctcttagggtacccacttttgtgaacgggtgaacgcttacaaaaa 38436468  T
Q  979 catatatatcacgtgcgcg 997  Q
    |||||||||||| ||||||    
T  38436469 catatatatcacatgcgcg 38436487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 836 - 990
Target Start/End: Complemental strand, 20811149 - 20810995
Alignment:
Q  836 gaactagtgtggttgtgtgacttaaaaatgtcccacattggttagtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgtc 935  Q
    |||||||||||  ||||||||||||||||||||||||||||| |  |||  ||||||  |||||||||||||| || |||||||| ||||||  ||||||    
T  20811149 gaactagtgtgagtgtgtgacttaaaaatgtcccacattggtaaaccacatcaactaaaaagtgtttatataaaggtagagtgacttccaaga-tgtgtc 20811051  T
Q  936 c-ttggggtacccacttttgtgaacgggtgaacgcttacaaaaacatatatatcac 990  Q
    | |||||||||||||| || || |||||||||||||||||||||||||||||||||    
T  20811050 ccttggggtacccactcttttgcacgggtgaacgcttacaaaaacatatatatcac 20810995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 849 - 957
Target Start/End: Complemental strand, 26962748 - 26962640
Alignment:
Q  849 tgtgtgacttaaaaatgtcccacattggttagtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgtccttggggtaccca 948  Q
    ||||||||||||||| ||| ||||||||| || ||| |||||||| ||||||||||||||||| |||||||||| |||||||||| ||||||||||||||    
T  26962748 tgtgtgacttaaaaaagtctcacattggtgagccacaccaactagaaagtgtttatataagggtagagtgaccttcaagggtgtgcccttggggtaccca 26962649  T
Q  949 cttttgtga 957  Q
    |||||||||    
T  26962648 cttttgtga 26962640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 849 - 987
Target Start/End: Complemental strand, 26929436 - 26929298
Alignment:
Q  849 tgtgtgacttaaaaatgtcccacattggttagtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgtccttggggtaccca 948  Q
    ||||||||||||||||||  ||||||||| ||| || |||||||| |||||||||||||||||  | |||||||||||| ||||| ||||||||||||||    
T  26929436 tgtgtgacttaaaaatgtttcacattggtgagttacaccaactagcaagtgtttatataagggtggggtgacctccaagtgtgtgcccttggggtaccca 26929337  T
Q  949 cttttgtgaacgggtgaacgcttacaaaaacatatatat 987  Q
    |||||| |||||||| | |||||| ||||| ||| ||||    
T  26929336 cttttgcgaacgggtaagcgcttagaaaaatataaatat 26929298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 849 - 928
Target Start/End: Complemental strand, 11777298 - 11777219
Alignment:
Q  849 tgtgtgacttaaaaatgtcccacattggttagtcaccccaactagtaagtgtttatataagggaagagtgacctccaagg 928  Q
    ||||||||||||||||||||||||||||| || ||| | |||||| ||||||||||||||||| || |||||||||||||    
T  11777298 tgtgtgacttaaaaatgtcccacattggtgagccacactaactagcaagtgtttatataagggtagggtgacctccaagg 11777219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 890 - 965
Target Start/End: Original strand, 2616921 - 2616996
Alignment:
Q  890 ctagtaagtgtttatataagggaagagtgacctccaagggtgtgtccttggggtacccacttttgtgaacgggtga 965  Q
    |||||||||||||||||||| || ||||| ||| ||| |||||| |||||||||||||||||||| ||||||||||    
T  2616921 ctagtaagtgtttatataagtgaggagtggcctacaacggtgtgcccttggggtacccacttttgcgaacgggtga 2616996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 849 - 941
Target Start/End: Complemental strand, 6025801 - 6025709
Alignment:
Q  849 tgtgtgacttaaaaatgtcccacattggttagtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgtccttggg 941  Q
    ||||||| ||||||||||| ||||||||| |||||| | |||||| ||||||||||||||||   | ||||||||||||| |||| |||||||    
T  6025801 tgtgtgatttaaaaatgtctcacattggtgagtcacactaactagcaagtgtttatataaggatggggtgacctccaaggatgtgcccttggg 6025709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 922 - 961
Target Start/End: Original strand, 3476364 - 3476403
Alignment:
Q  922 tccaagggtgtgtccttggggtacccacttttgtgaacgg 961  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  3476364 tccaagggtgtgcccttggggtacccacttttgtgaacgg 3476403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 922 - 961
Target Start/End: Original strand, 4117122 - 4117161
Alignment:
Q  922 tccaagggtgtgtccttggggtacccacttttgtgaacgg 961  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  4117122 tccaagggtgtgcccttggggtacccacttttgtgaacgg 4117161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 896 - 990
Target Start/End: Original strand, 27604568 - 27604663
Alignment:
Q  896 agtgtttatataagggaagagtgacctccaagggtgtgtccttggggtacccacttttgtgaacgggtgaacgcttac-aaaaacatatatatcac 990  Q
    |||||||||||||| ||   |||||||||||||||||  ||||| || |||||||||||| |||||  || ||||||| ||||| |||||||||||    
T  27604568 agtgtttatataagtgagaggtgacctccaagggtgttcccttgtggcacccacttttgtaaacggaagagcgcttacgaaaaatatatatatcac 27604663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 922 - 961
Target Start/End: Complemental strand, 54271294 - 54271255
Alignment:
Q  922 tccaagggtgtgtccttggggtacccacttttgtgaacgg 961  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  54271294 tccaagggtgtgcccttggggtacccacttttgtgaacgg 54271255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 916 - 990
Target Start/End: Complemental strand, 26707511 - 26707437
Alignment:
Q  916 gtgacctccaagggtgtgtccttggggtacccacttttgtgaacgggtgaacgcttacaaaaacatatatatcac 990  Q
    |||||| |||||| |||| | |||||||||| |||||||  ||||||||| ||||||| |||| |||||||||||    
T  26707511 gtgaccgccaaggatgtgcctttggggtaccaacttttgcaaacgggtgagcgcttacgaaaatatatatatcac 26707437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 922 - 961
Target Start/End: Original strand, 30338272 - 30338311
Alignment:
Q  922 tccaagggtgtgtccttggggtacccacttttgtgaacgg 961  Q
    |||||||||||| ||||||||||| |||||||||||||||    
T  30338272 tccaagggtgtgcccttggggtacacacttttgtgaacgg 30338311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 922 - 961
Target Start/End: Original strand, 30341376 - 30341415
Alignment:
Q  922 tccaagggtgtgtccttggggtacccacttttgtgaacgg 961  Q
    |||||||||||| ||||||||||| |||||||||||||||    
T  30341376 tccaagggtgtgcccttggggtacacacttttgtgaacgg 30341415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 779 - 816
Target Start/End: Complemental strand, 3448759 - 3448722
Alignment:
Q  779 tgttggaacactagttcaatctagtgagaaaattggat 816  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  3448759 tgtttgaacactagttaaatctagtgagaaaattggat 3448722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 136; Significance: 2e-70; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 779 - 990
Target Start/End: Complemental strand, 19478931 - 19478721
Alignment:
Q  779 tgttggaacactagttcaatctagtgagaaaattggatgagaataatcactacataggaactagtgtggttgtgtgacttaaaaatgtcccacattggtt 878  Q
    |||||||||||||||| ||||||||||||||||||||| |||| || ||| |  || |||||||||||  |||||||||||||||||||||||||||||     
T  19478931 tgttggaacactagttgaatctagtgagaaaattggataagaaaaa-cacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtg 19478833  T
Q  879 agtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgtccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 978  Q
    || ||| |||||||| ||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  19478832 agccacaccaactagaaagtgtttatataagggtagagtaacctccaagggtgtgcccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 19478733  T
Q  979 catatatatcac 990  Q
     |||||||||||    
T  19478732 tatatatatcac 19478721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 110; E-Value: 7e-55
Query Start/End: Original strand, 779 - 995
Target Start/End: Original strand, 17289607 - 17289819
Alignment:
Q  779 tgttggaacactagttcaatctagtgagaaaattggatgagaataatcactacataggaactagtgtggttgtgtgacttaaaaatgtcccacattggtt 878  Q
    |||||||||||||||| ||||||||||||||||||||| |||| || ||| |  || |||||||||||  |||||||||||||||||||||||||||||     
T  17289607 tgttggaacactagttgaatctagtgagaaaattggat-agaaaaa-cacaatgtaagaactagtgtg--tgtgtgacttaaaaatgtcccacattggtg 17289702  T
Q  879 agtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgtccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 978  Q
    || ||| ||||| || ||||||||||||||||| |||||||| ||||||| |||| ||||||  |||||||||||| |||| ||||| ||||||||||||    
T  17289703 agccacaccaacaagcaagtgtttatataagggtagagtgacatccaaggatgtgcccttggactacccacttttgcgaacaggtgagcgcttacaaaaa 17289802  T
Q  979 catatatatcacgtgcg 995  Q
    |||||||||||||||||    
T  17289803 catatatatcacgtgcg 17289819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 9e-39
Query Start/End: Original strand, 779 - 987
Target Start/End: Complemental strand, 10485890 - 10485685
Alignment:
Q  779 tgttggaacactagttcaatctagtgagaaaa-ttggatgagaataatcactacataggaactagtgtggttgtgtgacttaaaaatgtcccacattggt 877  Q
    |||||||| ||||||| ||||||||||||||| |||||| |||| || ||| |  || |||||||||||  |||| ||||||||||||| ||||||||||    
T  10485890 tgttggaatactagttaaatctagtgagaaaaattggat-agaaaaa-cacaatgtaagaactagtgtg--tgtgagacttaaaaatgttccacattggt 10485795  T
Q  878 tagtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgtccttggggtacccacttttgtgaacgggtgaacgcttacaaaa 977  Q
     || ||| |||||||| ||||||||||||||||| |||||||| |||||||||||| ||||| |||||| ||||||| |||  ||||| |||||| ||||    
T  10485794 gagccacaccaactagcaagtgtttatataagggtagagtgacatccaagggtgtgcccttgaggtacctacttttgcgaataggtgagcgcttagaaaa 10485695  T
Q  978 acatatatat 987  Q
    ||||||||||    
T  10485694 acatatatat 10485685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 83; E-Value: 9e-39
Query Start/End: Original strand, 782 - 997
Target Start/End: Original strand, 17280865 - 17281074
Alignment:
Q  782 tggaacactagttcaatctagtgagaaaattggatgagaataatcactacataggaactagtgtggttgtgtgacttaaaaatgtcccacattggttagt 881  Q
    ||||||| ||||| ||||||||||||||||||||| |||| ||| |  |  || |||||||||||    ||||||||||||||||  ||||||||| ||     
T  17280865 tggaacattagttgaatctagtgagaaaattggat-agaaaaat-agaatgtaagaactagtgtg----tgtgacttaaaaatgtttcacattggtgagc 17280958  T
Q  882 caccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgtccttggggtacccacttttgtgaacgggtgaacgcttacaaaaacat 981  Q
    ||   ||||||| ||||||||||||||||| ||||||||||||||||||||| |||| | |||||||||||||  ||||||||| ||||||||||||||     
T  17280959 catatcaactagcaagtgtttatataagggtagagtgacctccaagggtgtgcccttcgcgtacccacttttgcaaacgggtgagcgcttacaaaaacaa 17281058  T
Q  982 atatatcacgtgcgcg 997  Q
    |||||||||| |||||    
T  17281059 atatatcacgcgcgcg 17281074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 852 - 988
Target Start/End: Complemental strand, 29326317 - 29326187
Alignment:
Q  852 gtgacttaaaaatgtcccacattggttagtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgtccttggggtacccactt 951  Q
    |||||||||||||||| ||||||||| || ||| |||||||| |||||||||||||||||  | ||||||||||||||| ||||||| |||||     ||    
T  29326317 gtgacttaaaaatgtctcacattggtgaggcacaccaactagcaagtgtttatataagggtggggtgacctccaagggtatgtcctt-gggta-----tt 29326224  T
Q  952 ttgtgaacgggtgaacgcttacaaaaacatatatatc 988  Q
    |||||||| ||||| || ||| |||||||||||||||    
T  29326223 ttgtgaacaggtgagcgtttagaaaaacatatatatc 29326187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 849 - 948
Target Start/End: Complemental strand, 3902946 - 3902847
Alignment:
Q  849 tgtgtgacttaaaaatgtcccacattggttagtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgtccttggggtaccca 948  Q
    |||| ||||||||||||||| |||||||| | |||| |||||||| |||||||||||||||||  | |||||||||||||||||| ||||| ||||||||    
T  3902946 tgtgagacttaaaaatgtcctacattggtgaatcacaccaactagcaagtgtttatataagggtggggtgacctccaagggtgtgcccttgaggtaccca 3902847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 849 - 995
Target Start/End: Complemental strand, 13660520 - 13660375
Alignment:
Q  849 tgtgtgacttaaaaatgtcccacattggttagtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgtccttggggtaccca 948  Q
    |||||||||||||||| ||  | |||||| || ||| | |||||| |||||||||||||||||  |  |||||||||| |||||| ||||||| || ||     
T  13660520 tgtgtgacttaaaaatatcttatattggtgagccacactaactagcaagtgtttatataagggtgggatgacctccaaaggtgtgcccttgggatatcc- 13660422  T
Q  949 cttttgtgaacgggtgaacgcttacaaaaacatatatatcacgtgcg 995  Q
    |||||| ||||||| || | |||| ||||||||||||||||||||||    
T  13660421 cttttgagaacgggagagcacttagaaaaacatatatatcacgtgcg 13660375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 859 - 986
Target Start/End: Complemental strand, 22714050 - 22713923
Alignment:
Q  859 aaaaatgtcccacattggttagt-caccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgtccttggggtacccacttttgtga 957  Q
    ||||||||| ||||||||||||  ||| |  ||||||| ||||||||||||| | ||||||||||| |||||||||||||||||||||||| ||||   |    
T  22714050 aaaaatgtctcacattggttaggacacacttactagta-gtgtttatataagtggagagtgacctctaagggtgtgtccttggggtacccagttttacaa 22713952  T
Q  958 acgggtgaacgcttacaaaaacatatata 986  Q
    |||||||| ||||||| || | |||||||    
T  22713951 acgggtgagcgcttacgaatatatatata 22713923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 869 - 991
Target Start/End: Original strand, 28696922 - 28697047
Alignment:
Q  869 cacattggttagtcaccccaactagtaagtgtttat---ataagggaagagtgacctccaagggtgtgtccttggggtacccacttttgtgaacgggtga 965  Q
    ||||||||| ||  || |||||||| ||||||||||   |||||||  | |||||||| |||||||||  |||||||||||||||||||| |||| ||||    
T  28696922 cacattggtgagcaacaccaactagcaagtgtttattatataagggtggggtgacctctaagggtgtgcacttggggtacccacttttgtaaacgagtga 28697021  T
Q  966 acgcttacaaaaacatatatatcacg 991  Q
     |||||| ||||| | ||||||||||    
T  28697022 gcgcttagaaaaataaatatatcacg 28697047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 922 - 961
Target Start/End: Complemental strand, 34142756 - 34142717
Alignment:
Q  922 tccaagggtgtgtccttggggtacccacttttgtgaacgg 961  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  34142756 tccaagggtgtgcccttggggtacccacttttgtgaacgg 34142717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 922 - 961
Target Start/End: Complemental strand, 34155372 - 34155333
Alignment:
Q  922 tccaagggtgtgtccttggggtacccacttttgtgaacgg 961  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  34155372 tccaagggtgtgcccttggggtacccacttttgtgaacgg 34155333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 922 - 961
Target Start/End: Complemental strand, 34376439 - 34376400
Alignment:
Q  922 tccaagggtgtgtccttggggtacccacttttgtgaacgg 961  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  34376439 tccaagggtgtgcccttggggtacccacttttgtgaacgg 34376400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 836 - 933
Target Start/End: Original strand, 11956117 - 11956212
Alignment:
Q  836 gaactagtgtggttgtgtgacttaaaaatgtcccacattggttagtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtg 933  Q
    |||||||||||  ||| |||||||||||||| |||||| ||| || ||| | |||||| |||||||||||||||||  | ||||||| ||||| ||||    
T  11956117 gaactagtgtg--tgtatgacttaaaaatgttccacataggtgagccacactaactagaaagtgtttatataagggtggggtgacctacaaggatgtg 11956212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 922 - 961
Target Start/End: Original strand, 2817573 - 2817612
Alignment:
Q  922 tccaagggtgtgtccttggggtacccacttttgtgaacgg 961  Q
    |||||||||||| ||||||||||| |||||||||||||||    
T  2817573 tccaagggtgtgcccttggggtacacacttttgtgaacgg 2817612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 836 - 875
Target Start/End: Original strand, 14450652 - 14450691
Alignment:
Q  836 gaactagtgtggttgtgtgacttaaaaatgtcccacattg 875  Q
    |||||||||||  |||||||||||||||||||||||||||    
T  14450652 gaactagtgtgagtgtgtgacttaaaaatgtcccacattg 14450691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 922 - 961
Target Start/End: Complemental strand, 31982154 - 31982115
Alignment:
Q  922 tccaagggtgtgtccttggggtacccacttttgtgaacgg 961  Q
    |||||||| ||| |||||||||||||||||||||||||||    
T  31982154 tccaagggcgtgcccttggggtacccacttttgtgaacgg 31982115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 135; Significance: 8e-70; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 135; E-Value: 8e-70
Query Start/End: Original strand, 779 - 997
Target Start/End: Complemental strand, 42915356 - 42915139
Alignment:
Q  779 tgttggaacactagttcaatctagtgagaaaattggatgagaataatcactacataggaactagtgtggttgtgtgacttaaaaatgtcccacattggtt 878  Q
    |||||||||||||||| ||||||||||||||||||||| |||| || ||| |  || |||||||||||  |||||||||||||||||||||||||||||     
T  42915356 tgttggaacactagttgaatctagtgagaaaattggataagaaaaa-cacaatgtaagaactagtgtgagtgtgtgacttaaaaatgtcccacattggtg 42915258  T
Q  879 agtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgtccttggggtacccacttttgtgaacgggtgaacgcttacaaaaa 978  Q
    || ||| |||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||     
T  42915257 agccacaccaactagaaagtgtttatataagggtagagtgacctccaagggtgtgcccttggggtacccacttttgtgaacgggtgaacgcttgcaaaag 42915158  T
Q  979 catatatatcacgtgcgcg 997  Q
     ||||||||||| ||||||    
T  42915157 tatatatatcacatgcgcg 42915139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 776 - 990
Target Start/End: Complemental strand, 5089875 - 5089661
Alignment:
Q  776 atctgttggaacactagttcaatctagtgagaaaattggatgagaataatcactacataggaactagtgtggttgtgtgacttaaaaa-tgtcccacatt 874  Q
    |||||||| |||||||||| ||| ||||||||||||||||| |||| || ||| |  || |||||||||||  || | |||||||||| |||||||||||    
T  5089875 atctgttgaaacactagttgaatttagtgagaaaattggataagaaaaa-cacaatgtaagaactagtgtgagtgcgggacttaaaaaatgtcccacatt 5089777  T
Q  875 ggttagtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgtccttggggtacccacttttgtgaacgggtgaacgcttaca 974  Q
    ||| || ||| |||| ||| ||||||||||||||||  ||||||||||| ||||||||| |||||  |||||||||||||||||||||||||||||||||    
T  5089776 ggtgagccacaccaattagaaagtgtttatataaggatagagtgacctctaagggtgtgcccttgatgtacccacttttgtgaacgggtgaacgcttaca 5089677  T
Q  975 aaaacatatatatcac 990  Q
    |||| |||||||||||    
T  5089676 aaaatatatatatcac 5089661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 898 - 987
Target Start/End: Complemental strand, 39959848 - 39959759
Alignment:
Q  898 tgtttatataagggaagagtgacctccaagggtgtgtccttggggtacccacttttgtgaacgggtgaacgcttacaaaaacatatatat 987  Q
    ||||||||||||||  | |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||| | ||||||||    
T  39959848 tgtttatataagggtggggtgacctccaagggtgtgtccttggggtacccgcttttgcgaacgggtgaacgcttagaaatatatatatat 39959759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 850 - 944
Target Start/End: Original strand, 43111535 - 43111629
Alignment:
Q  850 gtgtgacttaaaaatgtcccacattggttagtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgtccttggggta 944  Q
    ||||||||||||||||||||| ||| || || ||| |||||||| |||||||||||||||||  | ||||||| |||||||||||| ||||||||    
T  43111535 gtgtgacttaaaaatgtcccatattagtgagccacaccaactagcaagtgtttatataagggtggggtgacctacaagggtgtgtcattggggta 43111629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 891 - 965
Target Start/End: Complemental strand, 44683795 - 44683721
Alignment:
Q  891 tagtaagtgtttatataagggaagagtgacctccaagggtgtgtccttggggtacccacttttgtgaacgggtga 965  Q
    ||||||||||||||||||| | || ||||||| ||||| |||||  |||||||||| ||||||| ||||||||||    
T  44683795 tagtaagtgtttatataagtggagggtgacctacaaggatgtgtgtttggggtaccaacttttgcgaacgggtga 44683721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 120; Significance: 7e-61; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 779 - 997
Target Start/End: Complemental strand, 2420 - 2202
Alignment:
Q  779 tgttggaacactagttcaatctagtgagaaaattggatgagaataatcactacataggaactagtgtggttgtgtgacttaaaaa-tgtcccacattggt 877  Q
    |||||||||||||||| || |||||||||||||||||| |||| || ||| |   | |||||||||||  ||||||||||||||| ||||||||||||||    
T  2420 tgttggaacactagttgaacctagtgagaaaattggataagaaaaa-cacaatgaaagaactagtgtgagtgtgtgacttaaaaaatgtcccacattggt 2322  T
Q  878 tagtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgtccttggggtacccacttttgtgaacgggtgaacgcttacaaaa 977  Q
     || ||| |||||||| ||||||||||||||||| |  |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  2321 gagccacaccaactagaaagtgtttatataagggtattgtgacctccaagggtgtgcccttggggtacccacttttgtgaacggatgaacgcttacaaaa 2222  T
Q  978 acatatatatcacgtgcgcg 997  Q
    |||||||||||||| |||||    
T  2221 acatatatatcacgcgcgcg 2202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 779 - 952
Target Start/End: Complemental strand, 7674 - 7501
Alignment:
Q  779 tgttggaacactagttcaatctagtgagaaaattggatgagaataatcactacataggaactagtgtggttgtgtgacttaaaaa-tgtcccacattggt 877  Q
    |||||||||||||||| || |||||||||||||||||| |||| || ||| |   | |||||||||||  ||||||||||||||| ||||||||||||||    
T  7674 tgttggaacactagttgaacctagtgagaaaattggataagaaaaa-cacaatgaaagaactagtgtgagtgtgtgacttaaaaaatgtcccacattggt 7576  T
Q  878 tagtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgtccttggggtacccacttt 952  Q
     || ||| |||||||| ||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||    
T  7575 gagccacaccaactagaaagtgtttatataagggtagtgtgacctccaagggtgtgcccttggggtacccacttt 7501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 110; Significance: 7e-55; HSPs: 2)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 110; E-Value: 7e-55
Query Start/End: Original strand, 779 - 960
Target Start/End: Original strand, 2421 - 2601
Alignment:
Q  779 tgttggaacactagttcaatctagtgagaaaattggatgagaataatcactacataggaactagtgtggttgtgtgacttaaaaatgtcccacattggtt 878  Q
    |||||||||||||||| ||||||||||||||||||||| |||| || ||| | ||| |||||||||||  ||||||||||||||||||||||||||| |     
T  2421 tgttggaacactagttgaatctagtgagaaaattggataagaaaaa-cacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacattgttg 2519  T
Q  879 agtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgtccttggggtacccacttttgtgaacg 960  Q
    || ||| |||||||| |||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2520 agccacaccaactagaaagtatttatataagggtagagtgacctccaagggtgtgcccttggggtacccacttttgtgaacg 2601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132; HSP #2
Raw Score: 110; E-Value: 7e-55
Query Start/End: Original strand, 779 - 960
Target Start/End: Original strand, 10381 - 10561
Alignment:
Q  779 tgttggaacactagttcaatctagtgagaaaattggatgagaataatcactacataggaactagtgtggttgtgtgacttaaaaatgtcccacattggtt 878  Q
    |||||||||||||||| ||||||||||||||||||||| |||| || ||| | ||| |||||||||||  ||||||||||||||||||||||||||| |     
T  10381 tgttggaacactagttgaatctagtgagaaaattggataagaaaaa-cacaatataagaactagtgtgagtgtgtgacttaaaaatgtcccacattgttg 10479  T
Q  879 agtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgtccttggggtacccacttttgtgaacg 960  Q
    || ||| |||||||| |||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  10480 agccacaccaactagaaagtatttatataagggtagagtgacctccaagggtgtgcccttggggtacccacttttgtgaacg 10561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 77; Significance: 3e-35; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 849 - 989
Target Start/End: Original strand, 33368 - 33508
Alignment:
Q  849 tgtgtgacttaaaaatgtcccacattggttagtcaccccaactagtaagtgtttatataagggaagagtgacctccaagggtgtgtccttggggtaccca 948  Q
    ||||||||||||||||||||||||||| | || ||| |||||||| ||||||||||||||| |  | |||| ||||||||||||| | ||||| ||||||    
T  33368 tgtgtgacttaaaaatgtcccacattgatgagccacaccaactagcaagtgtttatataagagtggggtgagctccaagggtgtgccattgggataccca 33467  T
Q  949 cttttgtgaacgggtgaacgcttacaaaaacatatatatca 989  Q
    ||||||||||||||||| |||||| ||||| ||||||||||    
T  33468 cttttgtgaacgggtgagcgcttagaaaaatatatatatca 33508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 36; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 922 - 961
Target Start/End: Original strand, 13158 - 13197
Alignment:
Q  922 tccaagggtgtgtccttggggtacccacttttgtgaacgg 961  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  13158 tccaagggtgtgcccttggggtacccacttttgtgaacgg 13197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 922 - 961
Target Start/End: Original strand, 18615 - 18654
Alignment:
Q  922 tccaagggtgtgtccttggggtacccacttttgtgaacgg 961  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  18615 tccaagggtgtgcccttggggtacccacttttgttaacgg 18654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0594 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0594
Description:

Target: scaffold0594; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 924 - 961
Target Start/End: Original strand, 8708 - 8745
Alignment:
Q  924 caagggtgtgtccttggggtacccacttttgtgaacgg 961  Q
    |||||||||| |||||||||||||||||||||||||||    
T  8708 caagggtgtgcccttggggtacccacttttgtgaacgg 8745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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