View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4401-Insertion-3 (Length: 871)
Name: NF4401-Insertion-3
Description: NF4401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4401-Insertion-3 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 713; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 713; E-Value: 0
Query Start/End: Original strand, 7 - 871
Target Start/End: Original strand, 55954396 - 55955267
Alignment:
| Q |
7 |
aatatattggatgatctcaaatagaataaagtgctgacaatgaatttttgttacaagtgctgacgataattttttgaagggaataatcaaataggaaaat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55954396 |
aatatattggatgatctcaaatagaataaagtgctgacaatgaatttttgttacaagtgctgacgataattttttgaagggaataatcaaataggaaaat |
55954495 |
T |
|
| Q |
107 |
gctatgattagcaaagaagggaaatgatatgtatagcggnnnnnnntgcacgaatccatcacgataagt----attttagttacctgcttacctgatttt |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
55954496 |
gctatgattagcaaagaagggaaatgatatgtatagcggaaaaaaatgcacgaatccatcacgataagtgtatattttagttacctgcttacctgatttt |
55954595 |
T |
|
| Q |
203 |
tgttaattccggacatttgccactgagtcattttaactataatacatgtttcgtgatggtttcacgatttttgttctcgtgataaataacatcgctgaat |
302 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
55954596 |
tgttaattccggacatctgccactgagtcattttaactataatacatgtttcgtgatggtttcacgatttttgtcctcgtgataaataacatcgctgaat |
55954695 |
T |
|
| Q |
303 |
caatgtggagttggaatcaaatacaggccatttcccctagccgctgcagctccaaaggcttcagtcatatccaagtcctctggtttcattccattaggaa |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55954696 |
caatgtggagttggaatcaaatacaggccatttctcctagccgctgcagctccaaaggcttcagtcatatccaagtcctctggtttcattccattaggaa |
55954795 |
T |
|
| Q |
403 |
gttcccaattgaagtgatacaacaatgcagccagaggaagctcaatattagctaagccaagcgaaattcccggacacattcttcttcctcccccaaaagg |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55954796 |
gttcccaattgaagtgatacaacaatgcagccagaggaagctcaatattagctaagccaagcgaaattcccggacacattcttcttcctcccccaaaagg |
55954895 |
T |
|
| Q |
503 |
catgtaatcaaagctattattattgttcaatttattaaaatcaaaaccagtactatcattaaacctttcaggtataaacttctttgcatcataccaatgt |
602 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55954896 |
catgtaatcaaagctattattattgttcaatttattaaaatcaaaaccagtactatcattaaacctttcaggtataaacttctttgcatcataccaatgt |
55954995 |
T |
|
| Q |
603 |
ttgggatctcttccaattgcccatgcatttactatcacgctagtctttattgg-atttcatatccatctatgttgcacgcttccctgcattctcttggga |
701 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
55954996 |
ttgggatctcttccaattgcccatgcatttactatcacgctagtctttattggtatttcatatccatctatgttgcaagcttccctgcattctctt-gga |
55955094 |
T |
|
| Q |
702 |
agcaaagtaaaagggtgggtgtaaccctca-agtttctttgatcagtgacctcaagtaagtaagttcatgtagatcactctcgtatattctctttttccc |
800 |
Q |
| |
|
|||||||||||| ||||||||||| ||||| ||||||||||||| |||| |||||||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
55955095 |
agcaaagtaaaa-ggtgggtgtaa-cctcatggtttctttgatcactgacttcaagtaactaagttcatgtagatcactctcatatattctctttttccc |
55955192 |
T |
|
| Q |
801 |
ttt-agagcttctcttattccggattgtg-tttcttcat-acacatgagtttttcatc-actctgacatagccca |
871 |
Q |
| |
|
||| | ||||||||||||| ||||||||| ||||||||| || | ||||||||||||| |||||||||||||||| |
|
|
| T |
55955193 |
tttaacagcttctcttatttcggattgtgctttcttcatcactcttgagtttttcatcaactctgacatagccca |
55955267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 308 - 871
Target Start/End: Original strand, 55958254 - 55958823
Alignment:
| Q |
308 |
tggagttggaatcaaatacaggccatttcccctagccgctgcagctccaaaggcttcagtcatatccaagtcctctggtttcattccattaggaagttcc |
407 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55958254 |
tggagttggaatcaaatacaggttgtttctcctagccacaacagctccaaaggcttcagtcatatccaagtcctctggtttcattccattaggaagttcc |
55958353 |
T |
|
| Q |
408 |
caattgaagtgatacaacaatgcagccagaggaagctcaatattagctaagccaagcgaaattcccggacacattcttcttcctcccccaaaaggcatgt |
507 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||| |||||||| |||| |
|
|
| T |
55958354 |
caattgaagtgatacaataatgcagcaagaggaagctcaatattagctaagccaaacaaaattcctggacacattcttcttcctcctccaaaagggatgt |
55958453 |
T |
|
| Q |
508 |
aatcaaagctattattat---tgttcaatttattaaaatcaaaaccagtactatcattaaacctttcaggtataaacttctttgcatcataccaatgttt |
604 |
Q |
| |
|
| |||||| ||||||||| | |||| |||||||||||||||| |||| |||| |||||| |||||||||||||||| |||||||||||||| ||| |
|
|
| T |
55958454 |
attcaaagttattattattactattcactttattaaaatcaaaatatttactgtcatgaaacctctcaggtataaacttctctgcatcataccaatattt |
55958553 |
T |
|
| Q |
605 |
gggatctcttccaattgcccatgcatttactatcacgctagtctttattgg-atttcatatccatctatgttgcacgcttccctgcattctcttgggaag |
703 |
Q |
| |
|
||||||||||| |||||||| |||||||||| ||| ||||||||||||| |||||||||||| |||||||||| |||||||||||||||||| ||| |
|
|
| T |
55958554 |
gggatctcttcacattgcccaagcatttactaacacattagtctttattggtatttcatatccacctatgttgcatgcttccctgcattctctt-ataag |
55958652 |
T |
|
| Q |
704 |
caaagtaaaagggtgggtgtaaccctca-agtttctttgatcagtgacctcaagtaagtaagttcatgtagatcactctcgtatattctctttttccctt |
802 |
Q |
| |
|
||||||| | ||||| ||||| ||||| |||||||||||||| ||| |||||||| ||||||| |||||||||||||| ||| |||||||||| |||| |
|
|
| T |
55958653 |
caaagtagca-ggtggatgtaa-cctcatagtttctttgatcactgaattcaagtaactaagttcttgtagatcactctcatatgttctctttttacctt |
55958750 |
T |
|
| Q |
803 |
taga-gcttctcttattccggattgtg-tttcttcat-acacatgagtttttcatc-actctgacatagccca |
871 |
Q |
| |
|
|| | | |||||||||| | ||||||| |||||||| || | || |||||||||| |||||||||| ||||| |
|
|
| T |
55958751 |
taaaggtttctcttatttcagattgtgccttcttcatcactcttgggtttttcatcaactctgacattgccca |
55958823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 208 - 797
Target Start/End: Original strand, 41795369 - 41795957
Alignment:
| Q |
208 |
attccggacatttgccactgagtcattttaactataatacatgtttcgtgatggtttcacgatttttgttctcgtgataaataacatcgctgaatcaatg |
307 |
Q |
| |
|
||||||||| ||||||| |||||||||||| |||| ||||| ||| |||||||||||| | |||| ||| |||||||| | |||||||||||||| |
|
|
| T |
41795369 |
attccggacttttgccat--agtcattttaaccataacacatgcttcatgatggtttcacaaatttttccctcacgataaatagcgtcgctgaatcaatg |
41795466 |
T |
|
| Q |
308 |
tggagttggaatcaaatacaggccatttcccctagccgctgcagctccaaaggcttcagtcatatccaagtcctctggtttcattccattaggaagttcc |
407 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||||| ||||||||| |||| ||||||| |||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
41795467 |
tggagtaggaatcaaatacaggccatttctcctagccgttgcagctcccaaggattcagtcttatctaagtcgtctggtttcattccattaggaagttcc |
41795566 |
T |
|
| Q |
408 |
caattgaagtgatacaacaatgcagccagaggaagctcaatattagctaagccaagcgaaattcccggacacattcttcttcctcccccaaaaggcatgt |
507 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| | |||| |||| |
|
|
| T |
41795567 |
caattgaagtgatgcaacaatgcagctagaggaagctcaatgttagctaagccaagcgaaattcccggacacattcttcttccttccctagaagggatgt |
41795666 |
T |
|
| Q |
508 |
aatcaaagctattattattgttcaatttattaaaatcaaaaccagtactatcattaaacctttcaggtataaacttctttgcatcataccaatgtttggg |
607 |
Q |
| |
|
| |||||| |||||||| | |||| ||||||||| |||||| | |||| || | |||||| | | ||||||| || | ||||||||| |||| |||||| |
|
|
| T |
41795667 |
attcaaagttattattactattcactttattaaattcaaaatctttactgtcctgaaacctcttatgtataaaattatctgcatcatatcaatatttggg |
41795766 |
T |
|
| Q |
608 |
atctcttccaattgcccatgcatttactatcacgctagtctttattgg-atttcatatccatctatgttgcacgcttccctgcattctcttgggaagcaa |
706 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||||||| || |||||||||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
41795767 |
atctcttccgattgcccatgcatttactatcacactagtctttataggtatttcatatccacctatgttgcacgcttccctgcattctctt-ggaagcaa |
41795865 |
T |
|
| Q |
707 |
agtaaaagggtgggtgtaacc-ctca-agtttctttgatcagtgacctcaagtaagtaagttcatgtagatcactctcgtatattctcttttt |
797 |
Q |
| |
|
||||||| ||||| ||||||| |||| ||||||||||||| |||| | |||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
41795866 |
agtaaaa-ggtggatgtaacctctcattgtttctttgatcactgactttaagtaaccaagttcatgtagatcactctcatatattctcttttt |
41795957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 174; Significance: 4e-93; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 4e-93
Query Start/End: Original strand, 350 - 818
Target Start/End: Original strand, 12425073 - 12425538
Alignment:
| Q |
350 |
agctccaaaggcttcagtcatatccaagtcctctggtttcattccattaggaagttcccaattgaagtgatacaacaatgcagccagaggaagctcaata |
449 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||| ||||||| ||||||||| || ||| | |||||| || | |||||||||||||||||||||||| |
|
|
| T |
12425073 |
agctccaaagacttcagtcatatctaagtcctcttctttcatttcattaggaattttccagtcgaagtggtaaagtaatgcagccagaggaagctcaata |
12425172 |
T |
|
| Q |
450 |
ttagctaagccaagcgaaattcccggacacattcttcttcctcccccaaaaggcatgtaatcaaagctattattattgttcaatttattaaaatcaaaac |
549 |
Q |
| |
|
|| || ||||||| | ||||||| |||||||||||||||||||| |||||||| | || | ||||||||||| | |||| ||||||||||||||||| |
|
|
| T |
12425173 |
tttgccaagccaaacaaaattcctggacacattcttcttcctcctccaaaagggaaatactgaaagctattatca---ttcactttattaaaatcaaaac |
12425269 |
T |
|
| Q |
550 |
cagtactatcattaaacctttcaggtataaacttctttgcatcataccaatgtttgggatctcttccaattgcccatgcatttactatcacgctagtctt |
649 |
Q |
| |
|
|||||||||||| |||||| || ||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||| ||| | | |||| || |
|
|
| T |
12425270 |
cagtactatcatgaaacctctccggtataaacttctcagcatcagaccaatgttcgggatctcttccaattgcccatgcatttaatattaagttagtttt |
12425369 |
T |
|
| Q |
650 |
tattgg-atttcatatccatctatgttgcacgcttccctgcattctcttgggaagcaaagtaaaagggtgggtgtaaccctca-agtttctttgatcagt |
747 |
Q |
| |
|
|| || |||||||||||| |||||||||||||||||||||||||||| | ||||| ||| | ||||||||||| ||||| ||||||||||||| | |
|
|
| T |
12425370 |
taaaggtatttcatatccacctatgttgcacgcttccctgcattctctcatg-agcaatgtagca-ggtgggtgtaa-cctcagggtttctttgatcact |
12425466 |
T |
|
| Q |
748 |
gacctcaagtaagtaagttcatgtagatcactctcgtatattctctttttcccttt-agagcttctcttatt |
818 |
Q |
| |
|
|| ||||||| ||||| ||||||||||||||| ||||||||||| || ||||| | ||||||||||||| |
|
|
| T |
12425467 |
aacttcaagtacccaagtttatgtagatcactctcatatattctcttcttacctttaacagcttctcttatt |
12425538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 308 - 804
Target Start/End: Complemental strand, 12268654 - 12268162
Alignment:
| Q |
308 |
tggagttggaatcaaatacaggccatttcccctagccgctgcagctccaaaggcttcagtcatatccaagtcctctggtttcattccattaggaagttcc |
407 |
Q |
| |
|
|||||||||||||||| ||||| ||| ||||| | | | ||||||| | ||||||||||||| ||||| |||| ||||||| ||||||||| || | |
|
|
| T |
12268654 |
tggagttggaatcaaaaacaggttgtttttcctagacaccgtagctccatattcttcagtcatatcaaagtcttctgctttcatttcattaggaattttc |
12268555 |
T |
|
| Q |
408 |
caattgaagtgatacaacaatgcagccagaggaagctcaatattagctaagccaagcgaaattcccggacacattcttcttcctcccccaaaaggcatgt |
507 |
Q |
| |
|
|| | |||||| || | || ||||||||||||||||||||||| ||||| |||| | ||| ||| |||||||||||||||||||| |||||||| |||| |
|
|
| T |
12268554 |
cagtcgaagtggtaaagtaaggcagccagaggaagctcaatatttgctaaaccaaacaaaactcctggacacattcttcttcctcctccaaaagggatgt |
12268455 |
T |
|
| Q |
508 |
aatcaaagctattattattgttcaatttattaaaatcaaaaccagtactatcattaaacctttcaggtataaacttctttgcatcataccaatgtttggg |
607 |
Q |
| |
|
| | ||||||||||| ||| || |||||||||||||||||||||| |||||| |||||| |||||||||||||||| ||||||| ||||||| ||||| |
|
|
| T |
12268454 |
actgaaagctattatcatt---cactttattaaaatcaaaaccagtattatcatgaaacctctcaggtataaacttctctgcatcagaccaatgattggg |
12268358 |
T |
|
| Q |
608 |
atctcttccaattgcccatgcatttactatcacgctagtctttattgg-atttcatatccatctatgttgcacgcttccctgcattctcttgggaagcaa |
706 |
Q |
| |
|
|||||||||||||||||||||||||| ||| | |||||||||| || ||||||||||| |||||||||| |||||||||||||||||| | ||| | |
|
|
| T |
12268357 |
atctcttccaattgcccatgcatttaatattaaattagtctttataggtatttcatatcctcctatgttgcatgcttccctgcattctctt-gtaagtat |
12268259 |
T |
|
| Q |
707 |
agtaaaagggtgggtgtaaccctca-agtttctttgatcagtgacctcaagtaagtaagttcatgtagatcactctcgtatattctctttttcccttta |
804 |
Q |
| |
|
| | | ||||||||||| ||||| ||||||||||||| |||| |||||||| |||||||||| | |||||| || || |||||||| || |||||| |
|
|
| T |
12268258 |
tgcacca-ggtgggtgtaa-cctcagggtttctttgatcactgacttcaagtaactaagttcatgcaaatcactttcataaattctcttcttaccttta |
12268162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 554 - 633
Target Start/End: Complemental strand, 7141710 - 7141631
Alignment:
| Q |
554 |
actatcattaaacctttcaggtataaacttctttgcatcataccaatgtttgggatctcttccaattgcccatgcattta |
633 |
Q |
| |
|
|||||||| |||||| || || |||||| ||| ||||||| ||||| ||| ||||||||||| |||||||| ||||||| |
|
|
| T |
7141710 |
actatcatcaaacctctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgcccacgcattta |
7141631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 606 - 640
Target Start/End: Complemental strand, 41465836 - 41465802
Alignment:
| Q |
606 |
ggatctcttccaattgcccatgcatttactatcac |
640 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |
|
|
| T |
41465836 |
ggatctcttccaatcgcccatgcatttactatcac |
41465802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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