View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4401-Insertion-5 (Length: 243)
Name: NF4401-Insertion-5
Description: NF4401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4401-Insertion-5 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 34090524 - 34090294
Alignment:
| Q |
8 |
gtttttactgttgtgtactatatctttctctgcttctcaaacaattattgtattattaatatgtggatttccccttcgtaacaagtttgttatgtggttc |
107 |
Q |
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| T |
34090524 |
gtttttactgttgtgtactatatctttctctgcttctcaaacaattattgtattattaatatgtggatttccccttcgtaacaagtttgttatgtggttc |
34090425 |
T |
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| Q |
108 |
ctcataattgtaacgtgtctctcagtgttttgcacagctggtgcatatgtgatttctatttggatgatattgaacccac-ttgatggaaccttttatcgt |
206 |
Q |
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| T |
34090424 |
ctcataattgtaacgtgtctctcagtgttttgcacagctggtgcatatgtgatttctatttggatgatattgaacccacgttgatggaaccttttatcgt |
34090325 |
T |
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| Q |
207 |
atcacaatttattatggggttttttgggtag |
237 |
Q |
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| T |
34090324 |
atcacaatttattatgggattttttgggtag |
34090294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 8 - 136
Target Start/End: Complemental strand, 34093497 - 34093369
Alignment:
| Q |
8 |
gtttttactgttgtgtactatatctttctctgcttctcaaacaattattgtattattaatatgtggatttccccttcgtaacaagtttgttatgtggttc |
107 |
Q |
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|||| ||||||| |||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34093497 |
gtttatactgttatgtactatatctttctctgcttctcaaacaataattgtgttactaatatgtggatttccccttcgtaacaagtttgttatgtggtta |
34093398 |
T |
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| Q |
108 |
ctcataattgtaacgtgtctctcagtgtt |
136 |
Q |
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| T |
34093397 |
ctcatgattgtaacgtgtctctcggtgtt |
34093369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 27 - 121
Target Start/End: Complemental strand, 34092612 - 34092518
Alignment:
| Q |
27 |
atatctttctctgcttctcaaacaattattgtattattaatatgtggatttccccttcgtaacaagtttgttatgtggttcctcataattgtaac |
121 |
Q |
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|||||||||||||||| ||| ||||| ||||| ||| || |||||||||||| |||| |||||||||||||||| ||| ||| ||||||||||| |
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| T |
34092612 |
atatctttctctgcttttcagacaataattgtgttactagcatgtggatttccacttcttaacaagtttgttatgaggtaccttataattgtaac |
34092518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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