View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4401_high_2 (Length: 410)
Name: NF4401_high_2
Description: NF4401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4401_high_2 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 8 - 396
Target Start/End: Original strand, 30719743 - 30720146
Alignment:
| Q |
8 |
ggacatcatcatacccggtaatggtaactgcatggatggatgctttatttgcactgcaagttccatcaacaccttgataaggatattgagcttcagtgtt |
107 |
Q |
| |
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||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| || ||||||||||||||||| |
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| T |
30719743 |
ggacatcttcatacccggtaatagtaactgcatggatggatgctttgtttgcactgcaagttccgtcaacaccttgataggggtattgagcttcagtgtt |
30719842 |
T |
|
| Q |
108 |
gagtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30719843 |
gagtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgt |
30719942 |
T |
|
| Q |
208 |
tccgataaagagaccaacttcccagtactcaacttatgaattccttcggttgccgcaacagcagaaaatgcccaacaacatcctacaaa----------- |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30719943 |
tccgataaagagaccaacttcccagtactcaacttatggattccttcggttgccgcaacagcagaaaatgcccaacaacatcctacaaaaaggtaaatta |
30720042 |
T |
|
| Q |
297 |
--------cagagttcaatgacaattcaatatttgatcacatgcatagtatgtaattgaatgcattacatgttagatagacacttaccacattgaccttg |
388 |
Q |
| |
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|||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
30720043 |
aaattaactagagtttaatgacaattcaatatttgatca----catagtttgtaattgaatgcattacataatagatagacacttaccacattgaccttg |
30720138 |
T |
|
| Q |
389 |
gttcttca |
396 |
Q |
| |
|
|||||||| |
|
|
| T |
30720139 |
gttcttca |
30720146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 8 - 396
Target Start/End: Complemental strand, 30881616 - 30881213
Alignment:
| Q |
8 |
ggacatcatcatacccggtaatggtaactgcatggatggatgctttatttgcactgcaagttccatcaacaccttgataaggatattgagcttcagtgtt |
107 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| || ||||||||||||||||| |
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|
| T |
30881616 |
ggacatcttcatacccggtaatagtaactgcatggatggatgctttgtttgcactgcaagttccgtcaacaccttgataggggtattgagcttcagtgtt |
30881517 |
T |
|
| Q |
108 |
gagtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30881516 |
gagtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgt |
30881417 |
T |
|
| Q |
208 |
tccgataaagagaccaacttcccagtactcaacttatgaattccttcggttgccgcaacagcagaaaatgcccaacaacatcctacaaa----------- |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30881416 |
tccgataaagagaccaacttcccagtactcaacttatggattccttcggttgccgcaacagcagaaaatgcccaacaacatcctacaaaaaggtaaatta |
30881317 |
T |
|
| Q |
297 |
--------cagagttcaatgacaattcaatatttgatcacatgcatagtatgtaattgaatgcattacatgttagatagacacttaccacattgaccttg |
388 |
Q |
| |
|
||| || ||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
30881316 |
aaattaactagaatttaatgacaattcaatatttgatca----catagtttgtaattgaatgcattacataatagatagacacttaccacattgaccttg |
30881221 |
T |
|
| Q |
389 |
gttcttca |
396 |
Q |
| |
|
|||||||| |
|
|
| T |
30881220 |
gttcttca |
30881213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 54 - 396
Target Start/End: Complemental strand, 30892653 - 30892296
Alignment:
| Q |
54 |
atttgcactgcaagttccatcaacaccttgataaggatattgagcttcagtgttgagtccatgattttgaatgatgaatttgaaagcatcatccataaga |
153 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30892653 |
atttgcactgcaagttccgtcaacaccttgataggggtattgagcttcagtgtggagtccatgattttgaatgatgaatttgaaagcatcatccataaga |
30892554 |
T |
|
| Q |
154 |
ccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgttccgataaagagaccaacttcccagtactcaacttatgaattcctt |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
30892553 |
ccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgttccgataaagagaccaacttcccagtactcaacttatggattcctt |
30892454 |
T |
|
| Q |
254 |
cggttgccgcaacagcagaaaatgcccaacaacatcctacaaa-------------------cagagttcaatgacaattcaatatttgatcacatgcat |
334 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||| |
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|
| T |
30892453 |
cggttgccgcaacagcagaaaatgcccaacaacatcctacaaaaaggtaaattaaaattaactagagtttaatgacaattcaatatttgatca----cat |
30892358 |
T |
|
| Q |
335 |
agtatgtaattgaatgcattacatgttagatagacacttaccacattgaccttggttcttca |
396 |
Q |
| |
|
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
30892357 |
agtttgtaattgaatgcattacataatagatagacacttaccacattgaccttggttcttca |
30892296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 8 - 293
Target Start/End: Original strand, 44731179 - 44731464
Alignment:
| Q |
8 |
ggacatcatcatacccggtaatggtaactgcatggatggatgctttatttgcactgcaagttccatcaacaccttgataaggatattgagcttcagtgtt |
107 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||| ||||| ||||| |||||| |||| ||||| ||||||||||||||||| ||| |||||||| | |
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|
| T |
44731179 |
ggacatcttcatacccggtaatggtagctgcatgaatggacgctttgtttgcattgcatgttccgtcaacaccttgataagggtatgcggcttcagtact |
44731278 |
T |
|
| Q |
108 |
gagtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgt |
207 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
44731279 |
aagtccgtgattttgaatgatgaatttgaaagcatcgtccataagaccaccctcacaaccttggtccacaccttttgtgtcacaatcaacaagttcttgt |
44731378 |
T |
|
| Q |
208 |
tccgataaagagaccaacttcccagtactcaacttatgaattccttcggttgccgcaacagcagaaaatgcccaacaacatcctac |
293 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
44731379 |
tccgataaagagaccaactttccagtactcaacttagtaattccttcggttgctgcaacagctgaaaatgcccaacaacatcctac |
44731464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 8 - 296
Target Start/End: Original strand, 16867566 - 16867854
Alignment:
| Q |
8 |
ggacatcatcatacccggtaatggtaactgcatggatggatgctttatttgcactgcaagttccatcaacaccttgataaggatattgagcttcagtgtt |
107 |
Q |
| |
|
||||||| |||||||| |||||||||||||||| ||||||| |||| ||||| |||| || || ||||||||||||||||| || | ||||| || || |
|
|
| T |
16867566 |
ggacatcttcatacccagtaatggtaactgcattgatggatcctttgtttgcgttgcatgtcccgtcaacaccttgataagggtagttggcttcggtatt |
16867665 |
T |
|
| Q |
108 |
gagtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| ||||| ||||||||| |
|
|
| T |
16867666 |
tagtccatgattttgaatgatgaatttgaaagcatcgtccataagaccaccctcacaaccttggtccacacctttcgtgtcacagtcaacgagttcttgt |
16867765 |
T |
|
| Q |
208 |
tccgataaagagaccaacttcccagtactcaacttatgaattccttcggttgccgcaacagcagaaaatgcccaacaacatcctacaaa |
296 |
Q |
| |
|
|| |||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
16867766 |
tctgataaagagatcaactttccagtactcaacttatgaattccttcggttgctgcaacagcagaaaacgcccaacaacatcctacaaa |
16867854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 396
Target Start/End: Original strand, 44731545 - 44731581
Alignment:
| Q |
360 |
ttagatagacacttaccacattgaccttggttcttca |
396 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||| |
|
|
| T |
44731545 |
ttagattgatacttaccacattgaccttggttcttca |
44731581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 223; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 10 - 296
Target Start/End: Complemental strand, 8899229 - 8898943
Alignment:
| Q |
10 |
acatcatcatacccggtaatggtaactgcatggatggatgctttatttgcactgcaagttccatcaacaccttgataaggatattgagcttcagtgttga |
109 |
Q |
| |
|
||||| |||||||||||||| ||| ||| || |||||||||||||||||| | || |||||||||||||| ||||| || ||||||||||||||||||| |
|
|
| T |
8899229 |
acatcttcatacccggtaatagtagttgcttgaatggatgctttatttgcattacatgttccatcaacaccctgataggggtattgagcttcagtgttga |
8899130 |
T |
|
| Q |
110 |
gtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgttc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8899129 |
gtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaatcaacaagttcttgttc |
8899030 |
T |
|
| Q |
210 |
cgataaagagaccaacttcccagtactcaacttatgaattccttcggttgccgcaacagcagaaaatgcccaacaacatcctacaaa |
296 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
8899029 |
tgataaagagaccaactttccagtactcaacttatgaattccttcggttgctgcaacagcagaaaacgcccaacaacatcctacaaa |
8898943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 151; Significance: 9e-80; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 62 - 296
Target Start/End: Complemental strand, 31727335 - 31727101
Alignment:
| Q |
62 |
tgcaagttccatcaacaccttgataaggatattgagcttcagtgttgagtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctc |
161 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||| |||||||||| | ||||||| |||||| |||||||||| |||||||||||||||||||||||||| |
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|
| T |
31727335 |
tgcatgttccatcaacaccttgataagggtattcagcttcagtgctaagtccattattttggatgatgaattcaaaagcatcatccataagaccaccctc |
31727236 |
T |
|
| Q |
162 |
acaaccttggtctacaccttttgtgtcacaatcaacaagttcttgttccgataaagagaccaacttcccagtactcaacttatgaattccttcggttgcc |
261 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||| || || || |||||||||||||||||||||||| |
|
|
| T |
31727235 |
acaaccttggtcttcaccatttgtgtcacaatcaacaagttcttgttctgataaagagaccaaatttcctgtggtcaacttatgaattccttcggttgat |
31727136 |
T |
|
| Q |
262 |
gcaacagcagaaaatgcccaacaacatcctacaaa |
296 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||| |
|
|
| T |
31727135 |
gcaaccgcagaaaacgcccaacaacatcctacaaa |
31727101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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