View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4401_low_4 (Length: 333)

Name: NF4401_low_4
Description: NF4401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4401_low_4
NF4401_low_4
[»] chr6 (5 HSPs)
chr6 (18-133)||(8041542-8041658)
chr6 (140-185)||(7972036-7972081)
chr6 (133-185)||(8041417-8041469)
chr6 (285-314)||(19090210-19090239)
chr6 (286-322)||(19737431-19737467)
[»] chr4 (3 HSPs)
chr4 (18-137)||(23523079-23523199)
chr4 (285-314)||(42862416-42862445)
chr4 (285-314)||(44832619-44832648)
[»] chr2 (5 HSPs)
chr2 (18-115)||(45123573-45123670)
chr2 (285-322)||(1110196-1110233)
chr2 (285-314)||(20951604-20951633)
chr2 (285-322)||(29806192-29806229)
chr2 (285-322)||(37398809-37398846)
[»] chr5 (9 HSPs)
chr5 (18-137)||(31384737-31384857)
chr5 (18-137)||(26558415-26558535)
chr5 (285-322)||(26072251-26072288)
chr5 (287-322)||(32050455-32050490)
chr5 (285-323)||(34368506-34368544)
chr5 (285-314)||(2443684-2443713)
chr5 (285-314)||(4959276-4959305)
chr5 (285-314)||(17568697-17568726)
chr5 (285-314)||(42224744-42224773)
[»] chr3 (5 HSPs)
chr3 (77-116)||(48961307-48961346)
chr3 (285-314)||(10769878-10769907)
chr3 (285-314)||(29775137-29775166)
chr3 (285-314)||(37600125-37600154)
chr3 (285-314)||(54140888-54140917)
[»] chr8 (1 HSPs)
chr8 (285-314)||(23142813-23142842)
[»] chr7 (5 HSPs)
chr7 (285-314)||(13919936-13919965)
chr7 (285-314)||(14759799-14759828)
chr7 (285-314)||(22786149-22786178)
chr7 (285-314)||(27888437-27888466)
chr7 (285-314)||(37549622-37549651)
[»] chr1 (4 HSPs)
chr1 (285-314)||(11135737-11135766)
chr1 (285-314)||(11430596-11430625)
chr1 (285-314)||(41095604-41095633)
chr1 (288-316)||(9165424-9165452)


Alignment Details
Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 8041658 - 8041542
Alignment:
Q  18 agtgcacgaatagcaacgaattaatattggtctttggatatacttgagattataagctttgttgactttcatttatttgaaaaatataataacactagct 117  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8041658 agtgcatgaatagcaacgaattaatattggtctttagatatacttgagattataagctttgttgactttcatttatttgaaacatataataacactagct 8041559  T
Q  118 tcctttat-gtgtgcca 133  Q
    |||||||| ||||||||    
T  8041558 tcctttatcgtgtgcca 8041542  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 7972036 - 7972081
Alignment:
Q  140 catagaatttgcaacttctaccattcattttagtgaaacctttatc 185  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  7972036 catagaatttgcaacttataccattcattttagtgaaacctttatc 7972081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 133 - 185
Target Start/End: Complemental strand, 8041469 - 8041417
Alignment:
Q  133 agtcgttcatagaatttgcaacttctaccattcattttagtgaaacctttatc 185  Q
    |||||| || |||||||||||||||||| | ||||||||||||||||||||||    
T  8041469 agtcgtacagagaatttgcaacttctactaatcattttagtgaaacctttatc 8041417  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 314
Target Start/End: Original strand, 19090210 - 19090239
Alignment:
Q  285 aggaatgctagcaacactctcttttgagca 314  Q
    ||||||||||||||||||||||||||||||    
T  19090210 aggaatgctagcaacactctcttttgagca 19090239  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 322
Target Start/End: Original strand, 19737431 - 19737467
Alignment:
Q  286 ggaatgctagcaacactctcttttgagcattgtctct 322  Q
    |||||||||||||||||||||||||| |||| |||||    
T  19737431 ggaatgctagcaacactctcttttgaacattctctct 19737467  T

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Target: chr4 (Bit Score: 89; Significance: 7e-43; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 23523079 - 23523199
Alignment:
Q  18 agtgcacgaatagcaacgaattaatattggtctttggatatacttgagattataagctttgttgactttcatttatttgaaaaatataataacactagct 117  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  23523079 agtgcacgaatagcaacgaattaatattggcctttggatataattgagattgtaagctttgttgactttcatttattagaaaaatataataacactagct 23523178  T
Q  118 tcctttat-gtgtgccagtcg 137  Q
     ||||||| |||||| |||||    
T  23523179 gcctttatcgtgtgctagtcg 23523199  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 314
Target Start/End: Original strand, 42862416 - 42862445
Alignment:
Q  285 aggaatgctagcaacactctcttttgagca 314  Q
    ||||||||||||||||||||||||||||||    
T  42862416 aggaatgctagcaacactctcttttgagca 42862445  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 314
Target Start/End: Complemental strand, 44832648 - 44832619
Alignment:
Q  285 aggaatgctagcaacactctcttttgagca 314  Q
    ||||||||||||||||||||||||||||||    
T  44832648 aggaatgctagcaacactctcttttgagca 44832619  T

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Target: chr2 (Bit Score: 74; Significance: 6e-34; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 45123573 - 45123670
Alignment:
Q  18 agtgcacgaatagcaacgaattaatattggtctttggatatacttgagattataagctttgttgactttcatttatttgaaaaatataataacactag 115  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||| ||||||| ||||||||||||    
T  45123573 agtgcacaaatagcaacgaattaatattggcctttggatatacttgagattgtaagctttgttgacattcatttattagaaaaatgtaataacactag 45123670  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 322
Target Start/End: Original strand, 1110196 - 1110233
Alignment:
Q  285 aggaatgctagcaacactctcttttgagcattgtctct 322  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  1110196 aggaatgctagcaacactctctttcgagcattctctct 1110233  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 314
Target Start/End: Original strand, 20951604 - 20951633
Alignment:
Q  285 aggaatgctagcaacactctcttttgagca 314  Q
    ||||||||||||||||||||||||||||||    
T  20951604 aggaatgctagcaacactctcttttgagca 20951633  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 322
Target Start/End: Complemental strand, 29806229 - 29806192
Alignment:
Q  285 aggaatgctagcaacactctcttttgagcattgtctct 322  Q
    ||||||| |||||||||||||||||||||||| |||||    
T  29806229 aggaatgttagcaacactctcttttgagcattctctct 29806192  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 322
Target Start/End: Original strand, 37398809 - 37398846
Alignment:
Q  285 aggaatgctagcaacactctcttttgagcattgtctct 322  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  37398809 aggaatgctagcaacactcttttttgagcattctctct 37398846  T

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Target: chr5 (Bit Score: 57; Significance: 9e-24; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 31384857 - 31384737
Alignment:
Q  18 agtgcacgaatagcaacgaattaatattggtctttggatatacttgagattataagctttgttgactttcatttatttgaaaaatataataacactagct 117  Q
    |||| ||||| |||||||||||||| || |  ||||||||| ||||||||| |||| |  ||||||||||||||||||||||||||||| ||||||||||    
T  31384857 agtggacgaaaagcaacgaattaatgttagcttttggatatgcttgagattgtaagttgcgttgactttcatttatttgaaaaatataacaacactagct 31384758  T
Q  118 tccttta-tgtgtgccagtcg 137  Q
     ||||||  ||||||||||||    
T  31384757 gcctttaccgtgtgccagtcg 31384737  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 26558415 - 26558535
Alignment:
Q  18 agtgcacgaatagcaacgaattaatattggtctttggatatacttgagattataagctttgttgactttcatttatttgaaaaatataataacactagct 117  Q
    |||||||||| | ||||||| ||||||  | |||| ||||| ||||||||| |||  | |||||||||||||||||||||||||||||||||||||||||    
T  26558415 agtgcacgaaaaccaacgaaataatatcagcctttagatatgcttgagattgtaaattgtgttgactttcatttatttgaaaaatataataacactagct 26558514  T
Q  118 tcctttat-gtgtgccagtcg 137  Q
     |||  || ||||||||||||    
T  26558515 acctgcatcgtgtgccagtcg 26558535  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 285 - 322
Target Start/End: Complemental strand, 26072288 - 26072251
Alignment:
Q  285 aggaatgctagcaacactctcttttgagcattgtctct 322  Q
    |||||||||||||||||||||||||||||||| |||||    
T  26072288 aggaatgctagcaacactctcttttgagcattctctct 26072251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 287 - 322
Target Start/End: Complemental strand, 32050490 - 32050455
Alignment:
Q  287 gaatgctagcaacactctcttttgagcattgtctct 322  Q
    |||||||||||||||||||||||||||||| |||||    
T  32050490 gaatgctagcaacactctcttttgagcattctctct 32050455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 323
Target Start/End: Complemental strand, 34368544 - 34368506
Alignment:
Q  285 aggaatgctagcaacactctcttttgagcattgtctctg 323  Q
    |||||||||||||||||||||||||||||| | ||||||    
T  34368544 aggaatgctagcaacactctcttttgagcactctctctg 34368506  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 314
Target Start/End: Original strand, 2443684 - 2443713
Alignment:
Q  285 aggaatgctagcaacactctcttttgagca 314  Q
    ||||||||||||||||||||||||||||||    
T  2443684 aggaatgctagcaacactctcttttgagca 2443713  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 314
Target Start/End: Original strand, 4959276 - 4959305
Alignment:
Q  285 aggaatgctagcaacactctcttttgagca 314  Q
    ||||||||||||||||||||||||||||||    
T  4959276 aggaatgctagcaacactctcttttgagca 4959305  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 314
Target Start/End: Original strand, 17568697 - 17568726
Alignment:
Q  285 aggaatgctagcaacactctcttttgagca 314  Q
    ||||||||||||||||||||||||||||||    
T  17568697 aggaatgctagcaacactctcttttgagca 17568726  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 314
Target Start/End: Complemental strand, 42224773 - 42224744
Alignment:
Q  285 aggaatgctagcaacactctcttttgagca 314  Q
    ||||||||||||||||||||||||||||||    
T  42224773 aggaatgctagcaacactctcttttgagca 42224744  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 77 - 116
Target Start/End: Original strand, 48961307 - 48961346
Alignment:
Q  77 tgttgactttcatttatttgaaaaatataataacactagc 116  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  48961307 tgttgactttcatttatttgaaaaatataataacactagc 48961346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 314
Target Start/End: Complemental strand, 10769907 - 10769878
Alignment:
Q  285 aggaatgctagcaacactctcttttgagca 314  Q
    ||||||||||||||||||||||||||||||    
T  10769907 aggaatgctagcaacactctcttttgagca 10769878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 314
Target Start/End: Original strand, 29775137 - 29775166
Alignment:
Q  285 aggaatgctagcaacactctcttttgagca 314  Q
    ||||||||||||||||||||||||||||||    
T  29775137 aggaatgctagcaacactctcttttgagca 29775166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 314
Target Start/End: Original strand, 37600125 - 37600154
Alignment:
Q  285 aggaatgctagcaacactctcttttgagca 314  Q
    ||||||||||||||||||||||||||||||    
T  37600125 aggaatgctagcaacactctcttttgagca 37600154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 314
Target Start/End: Original strand, 54140888 - 54140917
Alignment:
Q  285 aggaatgctagcaacactctcttttgagca 314  Q
    ||||||||||||||||||||||||||||||    
T  54140888 aggaatgctagcaacactctcttttgagca 54140917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 314
Target Start/End: Original strand, 23142813 - 23142842
Alignment:
Q  285 aggaatgctagcaacactctcttttgagca 314  Q
    ||||||||||||||||||||||||||||||    
T  23142813 aggaatgctagcaacactctcttttgagca 23142842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 314
Target Start/End: Complemental strand, 13919965 - 13919936
Alignment:
Q  285 aggaatgctagcaacactctcttttgagca 314  Q
    ||||||||||||||||||||||||||||||    
T  13919965 aggaatgctagcaacactctcttttgagca 13919936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 314
Target Start/End: Complemental strand, 14759828 - 14759799
Alignment:
Q  285 aggaatgctagcaacactctcttttgagca 314  Q
    ||||||||||||||||||||||||||||||    
T  14759828 aggaatgctagcaacactctcttttgagca 14759799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 314
Target Start/End: Original strand, 22786149 - 22786178
Alignment:
Q  285 aggaatgctagcaacactctcttttgagca 314  Q
    ||||||||||||||||||||||||||||||    
T  22786149 aggaatgctagcaacactctcttttgagca 22786178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 314
Target Start/End: Complemental strand, 27888466 - 27888437
Alignment:
Q  285 aggaatgctagcaacactctcttttgagca 314  Q
    ||||||||||||||||||||||||||||||    
T  27888466 aggaatgctagcaacactctcttttgagca 27888437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 314
Target Start/End: Original strand, 37549622 - 37549651
Alignment:
Q  285 aggaatgctagcaacactctcttttgagca 314  Q
    ||||||||||||||||||||||||||||||    
T  37549622 aggaatgctagcaacactctcttttgagca 37549651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 314
Target Start/End: Original strand, 11135737 - 11135766
Alignment:
Q  285 aggaatgctagcaacactctcttttgagca 314  Q
    ||||||||||||||||||||||||||||||    
T  11135737 aggaatgctagcaacactctcttttgagca 11135766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 314
Target Start/End: Complemental strand, 11430625 - 11430596
Alignment:
Q  285 aggaatgctagcaacactctcttttgagca 314  Q
    ||||||||||||||||||||||||||||||    
T  11430625 aggaatgctagcaacactctcttttgagca 11430596  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 314
Target Start/End: Original strand, 41095604 - 41095633
Alignment:
Q  285 aggaatgctagcaacactctcttttgagca 314  Q
    ||||||||||||||||||||||||||||||    
T  41095604 aggaatgctagcaacactctcttttgagca 41095633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 316
Target Start/End: Complemental strand, 9165452 - 9165424
Alignment:
Q  288 aatgctagcaacactctcttttgagcatt 316  Q
    |||||||||||||||||||||||||||||    
T  9165452 aatgctagcaacactctcttttgagcatt 9165424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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