View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4402-Insertion-2 (Length: 969)
Name: NF4402-Insertion-2
Description: NF4402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4402-Insertion-2 |
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Alignment Details
Target: chr6 (Bit Score: 857; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 857; E-Value: 0
Query Start/End: Original strand, 8 - 884
Target Start/End: Original strand, 20493199 - 20494075
Alignment:
| Q |
8 |
cattcttcactactattttcctactatatattgaggtagatgtaaccaaccaaaacacaaacaaaaagcatccctatctaacaatgaagcatcttttatc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20493199 |
cattcttcactactattttcctactatatattgaggtagatgtaaccaaccaaaacacaaacaaaaagcatccctatctaacaatgaagcatcttttatc |
20493298 |
T |
|
| Q |
108 |
actaaccctttccttcttcatctttgttttcatcaccaatctttcactagctacctcaaatgatgttgagcaagtattagacataaatggtaaccccatt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20493299 |
actaaccctttccttcttcatctttgttttcatcaccaatctttcactagctacctcaaatgatgttgagcaagtattagacataaatggtaaccccatt |
20493398 |
T |
|
| Q |
208 |
tttccaggtggtcaatactacattttaccagcacttcgtggccccggaggaggaggagtaagattaggaagaaccggtgatttaaagtgtccggttaccg |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20493399 |
tttccaggtggtcaatactacattttaccagcacttcgtggccccggaggaggaggagtaagattaggaagaaccggtgatttaaagtgtccggttaccg |
20493498 |
T |
|
| Q |
308 |
tcctacaagatcgtagagaagtcaaaaatggtctaccagtgaaattcaccataccaggaataagtcctggtataattttcactggtacaccacttgagat |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20493499 |
tcctacaagatcgtagagaagtcaaaaatggtctaccagtgaaattcaccataccaggaataagtcctggtataattttcactggtacaccacttgagat |
20493598 |
T |
|
| Q |
408 |
cgagtacacgaaaaaacctagttgtgctgcatcaacaaaatggttaatatttgttgataatgttattggaaaagcttgtattggtattggtggtcctgaa |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20493599 |
cgagtacacgaaaaaacctagttgtgctgcatcaacaaaatggttaatatttgttgataatgttattggaaaagcttgtattggtattggtggtcctgaa |
20493698 |
T |
|
| Q |
508 |
aattaccctggtgtgcaaacattgaagggaaaatttaatattcagaaacatgcatctggatttggttataacttagggttttgtgttactggatctccta |
607 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20493699 |
aattatcctggtgtgcaaacattgaagggaaaatttaatattcagaaacatgcatctggatttggttataacttagggttttgtgttactggatctccta |
20493798 |
T |
|
| Q |
608 |
cttgtttggatattggaagatttgataatgatgaagctggaagacgtttgaatttgactgaacatgaggtttatcaagttgtgtttgttgatgctgctac |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20493799 |
cttgtttggatattggaagatttgataatgatgaagctggaagacgtttgaatttgactgaacatgaggtttatcaagttgtgtttgttgatgctgctac |
20493898 |
T |
|
| Q |
708 |
ttatgaagctgagtatattaaatctgttgtttgaatttctatttagataactagattttgtaacttttgtttttattgtgtagaaccatgttcttgaaca |
807 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
20493899 |
ttatgaagctgagtatattaaatctgttgtttgaatttctatttagataactagcttatgtaacttttgtttttattgtgtagaactatgttcttgaaca |
20493998 |
T |
|
| Q |
808 |
atttaaacatttaataagtgaaataagttacctttgtttcttcctttcttgcatctagtttgttggagttgttcatg |
884 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20493999 |
atttaaacatttaataagtgaaataagttacctttgcttcttcctttcttgcatctagtttgttggagttgttcatg |
20494075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 171; E-Value: 3e-91
Query Start/End: Original strand, 74 - 623
Target Start/End: Original strand, 20475447 - 20475999
Alignment:
| Q |
74 |
agcatccctatctaacaatgaagcatcttttatcactaaccctttccttcttcatctttgttttcatcaccaatctttcactagctacctcaaatgatg- |
172 |
Q |
| |
|
||||||| |||||||| ||||| ||| |||||||||| |||||||||||| || | |||||||||| |||||||||||||||||| ||||||||||| |
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|
| T |
20475447 |
agcatccttatctaaccatgaaacatgttttatcactcaccctttccttcctcctgtttgttttcactaccaatctttcactagctttctcaaatgatgc |
20475546 |
T |
|
| Q |
173 |
--ttgagcaagtattagacataaatggtaaccccatttttccaggtggtcaatactacattttaccagcacttcgtggccccggaggaggaggagtaaga |
270 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| || ||| || |||||| ||||| |
|
|
| T |
20475547 |
tgttgaacaagtattagacataaatggtaaccccatttttccaggtggcaaatactacattttaccagcaattcgaggaccccttggtggaggactaaga |
20475646 |
T |
|
| Q |
271 |
ttaggaagaaccggtgatttaaagtgtccggttaccgtcctacaagatcgtagagaagtcaaaaatggtctaccagtgaaattcaccataccaggaataa |
370 |
Q |
| |
|
| |||| | | || ||| | | ||| ||||| || |||||||| | ||||| | |||||| ||||||||||||||| ||||||| ||||| |
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|
| T |
20475647 |
ctgggaaaatcaagtaattcagattgtgaagttactgttgtacaagattacaatgaagttatcaatggtgtaccagtgaaattcagtataccagaaataa |
20475746 |
T |
|
| Q |
371 |
gtcctggtataattttcactggtacaccacttgagatcgagtacacgaaaaaacctagttgtgctgcatcaacaaaatggttaatatttgttgataatgt |
470 |
Q |
| |
|
| ||||||||||| ||||||||||||||| |||| ||||||| ||| || || |||| ||| | || |||| |||||||||| ||||||||||||| ||| |
|
|
| T |
20475747 |
gccctggtataatcttcactggtacaccaattgatatcgagttcacaaagaagcctaattgcgttgaatcatcaaaatggttgatatttgttgatagtgt |
20475846 |
T |
|
| Q |
471 |
tattggaaaagcttgtattggtattggtggtcctgaaaattaccctggtgtgcaaacattgaagggaaaatttaatattcagaaacatgcatctggattt |
570 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||||||||| |||||| | |||||||| || | |||||||||| |||| |||| |||||||||| |
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|
| T |
20475847 |
tattcaaaaagcttgtgttggtattggtggtcctgaaaattatcctggttttagaacattgagtggcacatttaatattgagaagcatgaatctggattt |
20475946 |
T |
|
| Q |
571 |
ggttataacttagggttttgtgttactggatctcctacttgtttggatattgg |
623 |
Q |
| |
|
||||||| | || | |||||| | | ||||||||||||||||||||||| |
|
|
| T |
20475947 |
ggttataggcttggatattgtgtgaaagattctcctacttgtttggatattgg |
20475999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 91 - 233
Target Start/End: Complemental strand, 6869867 - 6869728
Alignment:
| Q |
91 |
atgaagcatcttttatcactaaccctttccttcttcatctttgttttcatcaccaatctttcactagctacctcaaatgatgttgagcaagtattagaca |
190 |
Q |
| |
|
||||||| | |||| ||||| |||||||||||| | || |||| ||||||||||| ||||||| ||||| ||| ||||||| |||||||||| |||| |
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|
| T |
6869867 |
atgaagcttgttttgtcactcaccctttccttccttatatttgctttcatcaccactctttcattagctttctctaatgatg---agcaagtattggaca |
6869771 |
T |
|
| Q |
191 |
taaatggtaaccccatttttccaggtggtcaatactacatttt |
233 |
Q |
| |
|
|||||||||||||||| | ||||| ||| ||||||||||||| |
|
|
| T |
6869770 |
caaatggtaaccccattgtcccaggcggtgaatactacatttt |
6869728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 240
Target Start/End: Original strand, 6285379 - 6285486
Alignment:
| Q |
130 |
tttgttttcatcaccaatctttcactagctacctcaaatgatgttgagcaagtattagacataaatggtaaccccatttttccaggtggtcaatactaca |
229 |
Q |
| |
|
|||| ||||||||||||||||||| |||| ||||||||||| | |||||||| |||| |||| ||||||| || | ||||||||| ||||||||| |
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|
| T |
6285379 |
tttgctttcatcaccaatctttcatcagctttctcaaatgatg---aacaagtattggacacaaatagtaaccctgttatcccaggtggtgaatactaca |
6285475 |
T |
|
| Q |
230 |
ttttaccagca |
240 |
Q |
| |
|
|||| |||||| |
|
|
| T |
6285476 |
tttttccagca |
6285486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 170
Target Start/End: Original strand, 20517317 - 20517374
Alignment:
| Q |
113 |
ccctttccttcttcatctttgttttcatcaccaatctttcactagctacctcaaatga |
170 |
Q |
| |
|
||||||||||| || |||||||||||||||| ||||||||||||| | ||||||||| |
|
|
| T |
20517317 |
ccctttccttcctcctctttgttttcatcacaaatctttcactagttttctcaaatga |
20517374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 426 - 623
Target Start/End: Original strand, 20517630 - 20517833
Alignment:
| Q |
426 |
tagttgtgctgcatcaacaaaatggttaatatttgttgataatgttatt---ggaaaagcttgtattggtattggtggtcctgaaaattaccct---ggt |
519 |
Q |
| |
|
|||||||| || |||| |||||||||| ||||||||||||||||||| | ||| | | | |||||||||||||||||||||| || ||| ||| |
|
|
| T |
20517630 |
tagttgtgttgaatcatcaaaatggttgatatttgttgataatgttaataacaacaaatcatttgttggtattggtggtcctgaaaactatcctcaaggt |
20517729 |
T |
|
| Q |
520 |
gtgcaaacattgaagggaaaatttaatattcagaaacatgcatctggatttggttataacttagggttttgtgttactggatctcctacttgtttggata |
619 |
Q |
| |
|
|||| |||||| ||||||||||||||| ||||| || ||||| | || |||||| || || |||||||||| | | |||||| ||||| ||||| |
|
|
| T |
20517730 |
acacaaatattgaatggaaaatttaatattaagaaatctggatctgaaaatgcttataagtttggattttgtgttaaggaaactcctagttgttgggata |
20517829 |
T |
|
| Q |
620 |
ttgg |
623 |
Q |
| |
|
|||| |
|
|
| T |
20517830 |
ttgg |
20517833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 684 - 718
Target Start/End: Original strand, 20476069 - 20476103
Alignment:
| Q |
684 |
agttgtgtttgttgatgctgctacttatgaagctg |
718 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |
|
|
| T |
20476069 |
agttgtgtttgttgatgctgcttcttatgaagctg |
20476103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 238
Target Start/End: Original strand, 24566488 - 24566553
Alignment:
| Q |
173 |
ttgagcaagtattagacataaatggtaaccccatttttccaggtggtcaatactacattttaccag |
238 |
Q |
| |
|
||||||||||||| ||||||||||| | |||| || || ||||| ||||||||||||||||||| |
|
|
| T |
24566488 |
ttgagcaagtattggacataaatggcaccccccttacccctggtggccaatactacattttaccag |
24566553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 443 - 533
Target Start/End: Complemental strand, 13072327 - 13072237
Alignment:
| Q |
443 |
caaaatggttaatatttgttgataatgttattggaaaagcttgtattggtattggtggtcctgaaaattaccctggtgtgcaaacattgaa |
533 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||| ||||| |||||||||||||||| ||||| || |||||| |||||| |||||| |
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|
| T |
13072327 |
caaaatggttgatatttgttgataatgttattcaaaaatcttgtgttggtattggtggtccagaaaactatcctggtatgcaaatattgaa |
13072237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 334 - 383
Target Start/End: Complemental strand, 25495173 - 25495124
Alignment:
| Q |
334 |
aatggtctaccagtgaaattcaccataccaggaataagtcctggtataat |
383 |
Q |
| |
|
||||| |||| ||||||||| | ||||||||||||||| ||||||||||| |
|
|
| T |
25495173 |
aatggcctacaagtgaaatttatcataccaggaataagccctggtataat |
25495124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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