View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4402-Insertion-3 (Length: 908)
Name: NF4402-Insertion-3
Description: NF4402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4402-Insertion-3 |
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| [»] scaffold0119 (4 HSPs) |
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Alignment Details
Target: scaffold0119 (Bit Score: 422; Significance: 0; HSPs: 4)
Name: scaffold0119
Description:
Target: scaffold0119; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 7 - 500
Target Start/End: Original strand, 19981 - 20474
Alignment:
| Q |
7 |
agtttttattattcattttctgtcgtatcaannnnnnngcaaagtaaagaatggattttattgaattgcctagacccacatgaaacagatgtgcaaatat |
106 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19981 |
agtttttattattcattttctgtcgtatcaatttttttgcaaagtaaagaatggattttattgaattgcctagacccacatgaaacagatgtgcaaatat |
20080 |
T |
|
| Q |
107 |
ggagtaaatacaagaagtacaccaataaaaacataacctatatatattacatcaaaacttttacagaaggaccaaattgaggcccaagaaatggtgattt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
20081 |
ggagtaaatacaagaagtacaccaataaaaacataacctatatatattacatcaaaacttttacagaaggactaaattgaggcccaagaaatggtgattt |
20180 |
T |
|
| Q |
207 |
tgttgaggttctcaacacactatggtcatagaacttttttaaaagtatccacccctggacctttaactccatgagtataaatactatgattagaccatag |
306 |
Q |
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||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20181 |
tgttgagattctcaacacactatggttatagaacttttttaaaagtatccacccctggacctttaactccatgagtataaatactatgattagaccatag |
20280 |
T |
|
| Q |
307 |
cagcaagtttcgtttgcttaatatgaatgacagctacgataagcatatgcttatggaaagctgattcctctaagaattagaggattaatnnnnnnnnntt |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
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| T |
20281 |
cagcaagtttcgtttgcttaatatgaatgacagctacgataagcatctgcttatggaaagctgattcctctaagaattagaggattaataaaaaaaaatt |
20380 |
T |
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| Q |
407 |
gcagatcgagctagactttgtaaagctgatttggttgaaaatttcaagttctaggcttagccggatatgttaatttttaaacataagtgtgacc |
500 |
Q |
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| T |
20381 |
gcagatcgagctagactttgtaaagctgatttggttgaaaatttcaagttctagacttagccggacatgttaatttttaaacataagtgtgacc |
20474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119; HSP #2
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 768 - 900
Target Start/End: Original strand, 20740 - 20872
Alignment:
| Q |
768 |
cttaaatgactgaatatgttaacaaatttataattgaattgaaagcataatatgctgagcacataggcaactgttttcacctacatctgatgctatgcaa |
867 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20740 |
cttaaatgactgaaaatgttaacaaatttataattgaattgaaagcataatatgctgagcacataggcaactgttttcacctacatctgatgctatgcaa |
20839 |
T |
|
| Q |
868 |
tacggttgaaatgtaccatcttcaaaccaggta |
900 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
20840 |
tacggttgaaatgtaccatcttcaaaccaggta |
20872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119; HSP #3
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 7 - 150
Target Start/End: Original strand, 14301 - 14444
Alignment:
| Q |
7 |
agtttttattattcattttctgtcgtatcaannnnnnngcaaagtaaagaatggattttattgaattgcctagacccacatgaaacagatgtgcaaatat |
106 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14301 |
agtttttattattcattttctgtcgtatcaatttttttgcaaagtaaagaatggattttattgaattgcctagacccacatgaaacagatgtgcaaatat |
14400 |
T |
|
| Q |
107 |
ggagtaaatacaagaagtacaccaataaaaacataacctatata |
150 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14401 |
ggagtaaatacaagaagtacaccaataaaaacataacctatata |
14444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119; HSP #4
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 550 - 695
Target Start/End: Original strand, 20524 - 20667
Alignment:
| Q |
550 |
catgaatgtatttaaatgagtatcctaacatatgattaaatagaacaacaaattaattgatcagtgagattaagctcggtccattttttgtaccgnnnnn |
649 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
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| T |
20524 |
catgaatgtatttaaatgagtatcctaacatatgattaaatagaacaacaaactaattgatcagtgagattaagctcgatccattttttgtaccg--aaa |
20621 |
T |
|
| Q |
650 |
nnnnnnnctagttccattttaaatgatagtttagaaaatacaattc |
695 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||| |
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| T |
20622 |
aaaaaaactagttccattttgaatgatagtttagaaaatacaattc |
20667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 168; Significance: 1e-89; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 175 - 372
Target Start/End: Complemental strand, 1292065 - 1291871
Alignment:
| Q |
175 |
ggaccaaattgaggcccaagaaatggtgattttgttgaggttctcaacacactatggtcatagaacttttttaaaagtatccacccctggacctttaact |
274 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1292065 |
ggactaaattgaggcccaagaaatggtgattttgttgagattctcaacacactatggttatagaacttttttaaaagtatccacccctggacctttaact |
1291966 |
T |
|
| Q |
275 |
ccatgagtataaatactatgattagaccatagcagcaagtttcgtttgcttaatatgaatgacagctacgataagcatatgcttatggaaagctgatt |
372 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1291965 |
ccatgagtataaatact---attagaccatagcagcaagtttcgtttgcttaatatgaatgacagctacgataagcatctgcttatggaaagctgatt |
1291871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 7 - 149
Target Start/End: Complemental strand, 1292448 - 1292306
Alignment:
| Q |
7 |
agtttttattattcattttctgtcgtatcaannnnnnngcaaagtaaagaatggattttattgaattgcctagacccacatgaaacagatgtgcaaatat |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1292448 |
agtttttattattcattttctgtcgtatcaatttttttgcaaagtaaagaatggattttattgaattgcctagacccacatgaaacagatgtgcaaatat |
1292349 |
T |
|
| Q |
107 |
ggagtaaatacaagaagtacaccaataaaaacataacctatat |
149 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1292348 |
ggagtaaatacaagaagtacaccaataaaaacataacctatat |
1292306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 405 - 500
Target Start/End: Complemental strand, 1291855 - 1291760
Alignment:
| Q |
405 |
ttgcagatcgagctagactttgtaaagctgatttggttgaaaatttcaagttctaggcttagccggatatgttaatttttaaacataagtgtgacc |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
1291855 |
ttgcagatcgagctagactttgtaaagctgatttggttgaaaatttcaagttctaggcttagccggacatgttaatttttaaacataagtgtgacc |
1291760 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 818 - 904
Target Start/End: Original strand, 1301406 - 1301492
Alignment:
| Q |
818 |
tatgctgagcacataggcaactgttttcacctacatctgatgctatgcaatacggttgaaatgtaccatcttcaaaccaggtagcac |
904 |
Q |
| |
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| T |
1301406 |
tatgctgagcacataggcaactgttttcacctacatctgatgctatgcaatacggttgaaatgtaccatcttcaaaccaggtagcac |
1301492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 550 - 644
Target Start/End: Complemental strand, 1291710 - 1291616
Alignment:
| Q |
550 |
catgaatgtatttaaatgagtatcctaacatatgattaaatagaacaacaaattaattgatcagtgagattaagctcggtccattttttgtaccg |
644 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||| |
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|
| T |
1291710 |
catgaatgtatttaaatgagtatcctaacatatgattaaatagaacaacaaactaattgattagtgagattaagctcgatccattttttgtaccg |
1291616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 831 - 904
Target Start/End: Complemental strand, 1291462 - 1291389
Alignment:
| Q |
831 |
taggcaactgttttcacctacatctgatgctatgcaatacggttgaaatgtaccatcttcaaaccaggtagcac |
904 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1291462 |
taggcaactgttttcacctacatctgatgctatgcaatacggttgaaatgtaccatattcaaaccaggtagcac |
1291389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 1292296 - 1292246
Alignment:
| Q |
133 |
aaaaacataacctatatatattacatcaaaacttttacagaaggaccaaat |
183 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1292296 |
aaaaacataacctatatatattacatcaaaacttttacagaaggactaaat |
1292246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 87; Significance: 3e-41; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 818 - 904
Target Start/End: Original strand, 26672064 - 26672150
Alignment:
| Q |
818 |
tatgctgagcacataggcaactgttttcacctacatctgatgctatgcaatacggttgaaatgtaccatcttcaaaccaggtagcac |
904 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26672064 |
tatgctgagcacataggcaactgttttcacctacatctgatgctatgcaatacggttgaaatgtaccatcttcaaaccaggtagcac |
26672150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 818 - 904
Target Start/End: Original strand, 26674592 - 26674678
Alignment:
| Q |
818 |
tatgctgagcacataggcaactgttttcacctacatctgatgctatgcaatacggttgaaatgtaccatcttcaaaccaggtagcac |
904 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26674592 |
tatgctgagcacataggcaactgttttcacctacatctgatgctatgcaatacggttgaaatgtaccatcttcaaaccaggtagcac |
26674678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 768 - 814
Target Start/End: Original strand, 65350 - 65396
Alignment:
| Q |
768 |
cttaaatgactgaatatgttaacaaatttataattgaattgaaagca |
814 |
Q |
| |
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||||||| |||||| |||||||||||||||||||| |||| |||||| |
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| T |
65350 |
cttaaattactgaaaatgttaacaaatttataatttaattcaaagca |
65396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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