View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4402_high_13 (Length: 504)
Name: NF4402_high_13
Description: NF4402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4402_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 19 - 491
Target Start/End: Complemental strand, 41403968 - 41403496
Alignment:
| Q |
19 |
ctttgtggcttagtccttcagaaggtcttgaagaaatgcttggtttttgttgcatagccgtgacactatcgattccaagatcgctcgccgaaggcttcga |
118 |
Q |
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| T |
41403968 |
ctttgtggcttagtccttcagaaggtcttgaagaaatgcttggtttttgttgcatagccgtgacactatcgattccaagatcgctcgccgaaggctttga |
41403869 |
T |
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| Q |
119 |
cgtttcataagaaatatctttcactaaacttgatccaagcttttttggagcctgagttccagctagcaacttttcccccttgggaaagtgccaaatttca |
218 |
Q |
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| T |
41403868 |
cgtttcataagaaatatctttcactaaacttgacccaagcttttttggagcctgagttccagctagcaacttttcccccttgggaaagtgccaaatttca |
41403769 |
T |
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| Q |
219 |
gtttgcttggaccggaaggtactagagctaatgtttttcaccttagaaggcgcagttaaaggaaatgatcctgattttgtcaatttcgctttattgtgag |
318 |
Q |
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| T |
41403768 |
gtttgcttggaccggaaggtactagagctaatgtttttcaccttagaaggcgcggttaaaggaaatgatcctgattttgtcaatttcgctttattgtgag |
41403669 |
T |
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| Q |
319 |
gagtttgatgaannnnnnnaccaccaatgtctatatctcttagaaatttgagtaatgcatttttctccacattaattacctccaaaacatcatcattgtt |
418 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
41403668 |
gagtttgatgaatttttttaccaccaatgtctatatctcttagaaatttgagtaatgcattcttctccacattaattacctccaaaacatcatcattgtt |
41403569 |
T |
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| Q |
419 |
tttgaatttaattgaaatgtctctgttaagggaaccttgatccgttgttgtcttgacatctttcttctgatga |
491 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
41403568 |
tttgaatttaattgaaatgtctctgttaagggaaccttgatctgttgttgtattgacatctttcttctgatga |
41403496 |
T |
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