View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4402_high_26 (Length: 410)
Name: NF4402_high_26
Description: NF4402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4402_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 16 - 394
Target Start/End: Complemental strand, 20074157 - 20073786
Alignment:
| Q |
16 |
aagaagtaaatatatgttggcattttccttcccgccttgcgagctgccgatgtaggaacatctgttcaccagaacgcataagttgaatgcagaaaaattt |
115 |
Q |
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| T |
20074157 |
aagaagtaaatatatgttggcattttccttcccgccttgcgagctgccgatgtaggaacatctgttcaccagaacgcataagttgaatgccgaaaatttt |
20074058 |
T |
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| Q |
116 |
gatagaataggatcatagtt-atttgattttgttatgttcatttttatatgtatataagaaaataagaacacctttaataagtctccatgccatttttct |
214 |
Q |
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| T |
20074057 |
gatagaataggatcatagtttatttgattttgttatgttcatttttatatgtatataagaa--------cacctttaataagtctccatgccatttttct |
20073966 |
T |
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| Q |
215 |
tgaaccataatggaaagtaattctttctaaaatgcgtctagttgtcacaactgtaacctgtgatgattttgaaacaatgttatagtaacaattgtctata |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
20073965 |
tgaaccataatggaaagtaattctttctaaaatgcgtctagttgtcacaaccgtaacctgtgatgaatttgaaacaatgttatagtaacaattgtctata |
20073866 |
T |
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| Q |
315 |
gaaaaatctgttgaacaatgttatagtaaatattgcatatgccataattttttcttcactaactatggaatacatataat |
394 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
20073865 |
gaaaaatctgttgaacaatgttattgtaaatattgcatatgccataattttttattcactaactatggaatacatataat |
20073786 |
T |
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