View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4402_high_29 (Length: 369)
Name: NF4402_high_29
Description: NF4402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4402_high_29 |
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Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 16 - 353
Target Start/End: Complemental strand, 43116220 - 43115883
Alignment:
| Q |
16 |
atcatccacctccgatcatcaatcttcaacaaacacagacacatcaccaccgatggccgcacccaatatgatgtattacccaccgggtaccggttaccct |
115 |
Q |
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| T |
43116220 |
atcatccacctccgatcatcaatcttcaacaaacacagacacatcaccaccggtggccgcacccaatatgatgtattacccaccgggtaccggttaccct |
43116121 |
T |
|
| Q |
116 |
tgccatggcccacagccaccaccctatcatccttacccaccacctccacacggataccccccataccagcagggatacaataactttcctggtcatgcac |
215 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43116120 |
tgccatggtccacagccaccaccctatcatccttacccaccacctccacacggataccccccataccagcagggatacaataactttcctggtcatgcac |
43116021 |
T |
|
| Q |
216 |
catactatgacgtccctcgaacctatcatcacaccggtgatggtggtagcagcttctttcgtggatttataatgtgttcatgttttatatttacaggctt |
315 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43116020 |
catactatgacgtccctcgaacatatcatcacaccggtgatggtggtagcagcttctttcgtggatttataatgtgttcatgttttatatttacaggctt |
43115921 |
T |
|
| Q |
316 |
ctttgttctaactctcattgcggcattatcgttacatc |
353 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
43115920 |
ctttgttctaactctcattgcggcattatcgttacatc |
43115883 |
T |
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