View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4402_high_34 (Length: 346)
Name: NF4402_high_34
Description: NF4402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4402_high_34 |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 19 - 331
Target Start/End: Complemental strand, 7467662 - 7467350
Alignment:
| Q |
19 |
tttgtcccatatatgaaaatttcagaatcaacagcaatgcaaacacgccatttttaatcctggttttttcaactttgatgacatgttcctaccagtttaa |
118 |
Q |
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| T |
7467662 |
tttgtcccatatatgaaaatttcagaatcaacagcaatgcaaacacgccatttttaatcctggttttttcaactttgatgacatgttcctaccagtttaa |
7467563 |
T |
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| Q |
119 |
tttccgtgcctaaaaaggtgcttatgagtagagttttgttaacttgagcagagtttatattattggaagttctaatggatttcagtcaaatagttgctac |
218 |
Q |
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| T |
7467562 |
tttccgtgcctaaaaaggtgcttatgagtagagttttgttaacttgagcagagtttatattattggaagttctaatggatttcagtcaaatagttgctac |
7467463 |
T |
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| Q |
219 |
tgcactatggccaccattgagtttctcaaatgtctttaatcttaaacatagatagctaagaatatttatttgagtatgtgactaatcatgaatactaaat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7467462 |
tgcactatggccaccattgagtttctcaaatgtctttaatcttaaacatagatagctaagaatatttatttgagtatgtgactaatcatgaatactaaat |
7467363 |
T |
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| Q |
319 |
ccagtgcttcata |
331 |
Q |
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| T |
7467362 |
ccagtgcttcata |
7467350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 208 - 323
Target Start/End: Original strand, 44929127 - 44929240
Alignment:
| Q |
208 |
atagttgctactgcactatggccaccattgagtttctcaaatgtctttaatcttaaacatagatagctaagaatatttatttgagtatgtgactaatcat |
307 |
Q |
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| T |
44929127 |
atagttgcaactgcacaatggccaccattgagtttctcaaatgtct--aatcttaaacataggtagctaagaatatttatttgagtatgtgactaatcat |
44929224 |
T |
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| Q |
308 |
gaatactaaatccagt |
323 |
Q |
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| T |
44929225 |
gaatattaaatccagt |
44929240 |
T |
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