View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4402_high_38 (Length: 332)
Name: NF4402_high_38
Description: NF4402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4402_high_38 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 17 - 323
Target Start/End: Complemental strand, 15379125 - 15378821
Alignment:
| Q |
17 |
agaagggactaaagtttcttccatctttgcagctaaagacaagcaagcaactgatagaagttgcagtggccacccatttgtttgctgtaaacaaacatat |
116 |
Q |
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| T |
15379125 |
agaagggactaaagtttcttccatctttgcagctaaagacaagcaagcaactgatagaagttgcagtggccacccatttgtttgctgtaaacaaacatat |
15379026 |
T |
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| Q |
117 |
ttatatgtatcaaacagtaagttnnnnnnnnnnnnntaattatcatcattattattatattttatcacgactaactcatcatactttctgacacattttc |
216 |
Q |
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|||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
15379025 |
ttatatgtatcaaacagtgagttaaaaacaaaaaaataattatcatcattattattat--tttatcacgactaactcatcatactttctgacacattttc |
15378928 |
T |
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| Q |
217 |
ccacgcgcaatgcacgtgcctaacgtactcaaaacatcaccaagctgtcattcttcttatttttcaacaaaatcgttaggatgagttattatagtactga |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15378927 |
ccacgcgcaatgcacgtgcctaacgtactcaaaacatcaccaagctgtcattcttcttatttttcaacaaaatcgttaggatgagttattatagtactga |
15378828 |
T |
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| Q |
317 |
gtataat |
323 |
Q |
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||||||| |
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| T |
15378827 |
gtataat |
15378821 |
T |
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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 26436720 - 26436789
Alignment:
| Q |
36 |
tccatctttgcagctaaagacaagcaagcaactgatagaagttgcagtggccacccatttgtttgctgta |
105 |
Q |
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||||||||||| ||||||||||| || ||||| |||| ||||||||||||||| ||||||| || ||||| |
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| T |
26436720 |
tccatctttgctgctaaagacaaacatgcaacagataaaagttgcagtggccatccatttgattcctgta |
26436789 |
T |
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