View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4402_high_4 (Length: 781)
Name: NF4402_high_4
Description: NF4402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4402_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 722; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 722; E-Value: 0
Query Start/End: Original strand, 9 - 762
Target Start/End: Complemental strand, 43585887 - 43585134
Alignment:
| Q |
9 |
gaggagcacagatcacaaaagctacaaaacaacctcgatcaaatcaaaaatcactagccaaaggtacatggtctgagggcatgaagacatagctatagat |
108 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43585887 |
gaggaacacaaatcacaaaagctacaaaacaacctcaatcaaatcaaaaatcactagccaaaggtacatggtctgagggcatgaagacatagctatagat |
43585788 |
T |
|
| Q |
109 |
gacaccagccaaaccaccaccaataagaggtccaacccaatagatccagttgttatggtagtcaccacttacaaccgcaggcccgaatgaacgtgccgga |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
43585787 |
gacaccagccaaaccaccaccaataagaggtccaacccaatagatccagttgttatggtagtcaccacttaaaactgcaggcccgaatgaacgtgccgga |
43585688 |
T |
|
| Q |
209 |
ttcattgacccaccagagaatggtcctgcagctaagatattggcaccaacaatcaaaccaatagcaattggtgcaattgtccctaatgaccctttcttag |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43585687 |
ttcattgacccaccagagaatggtcctgcagctaagatattggcaccaacaatcaaaccaatagcaattggtgcaattgtccctaatgaccctttcttag |
43585588 |
T |
|
| Q |
309 |
gatcagctgctgtggcatacactgtgtacaccaatccaaatgttatgataatctctgtcacaactccttcaccagctccaactccagaagcaacactgtg |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43585587 |
gatcagctgctgtggcatacactgtgtacaccaatccaaatgttatgataatctctgtcacaactccttcaccagctccaactccagaagcaacactgtg |
43585488 |
T |
|
| Q |
409 |
gataggaattgtctgaaaataaatacatagcatacaatcagttatggaactattgatgttttaaaattcaaaaaggtatgaaacttgtgatgcaagaatg |
508 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43585487 |
gataggaattgtctgaaaacaaatacatagcacacaatcagttatggaactattgatgttttaaaattcaaaaaggtatgaaacttgtgatgcaagaatg |
43585388 |
T |
|
| Q |
509 |
ataaacataccaagcctcctgtggcatacttgaggagaaagcatgctactatggaaccaagaagttgtgcaatccagtagaagataccagtgaggatagt |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43585387 |
ataaacataccaagcctcctgtggcatacttgaggagaaagcatgccactatggaaccaagaagttgtgcaatccagtagaagataccagtgaggatagt |
43585288 |
T |
|
| Q |
609 |
gatctgtcccccaatagccaacccaaaggtcacagctgggttgacatgtccaccagatatgttggctccaacagaaacagcaacaaaaagagcaaaacca |
708 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43585287 |
gatctgtcccccaatagccaacccaaaggtcacagctgggttgacatgtccaccagatatgttggctccaacagaaacagcaacaaaaagagcaaaacca |
43585188 |
T |
|
| Q |
709 |
tgacaaacagcaactgctactaatccagcaggatcaagagctgcacctgatgtc |
762 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43585187 |
tgacaaacagcaactgctactaatccagcaggatcaagagctgcacctgatgtc |
43585134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 138; Significance: 1e-71; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 87 - 376
Target Start/End: Original strand, 4188994 - 4189283
Alignment:
| Q |
87 |
gcatgaagacatagctatagatgacaccagccaaaccaccaccaataagaggtccaacccaatagatccagttgttatggtagtcaccacttacaaccgc |
186 |
Q |
| |
|
||||||| |||| || |||||| | |||||||||||||||||||||||||| ||| |||||||||||||||||| |||| | | ||||| ||||| || |
|
|
| T |
4188994 |
gcatgaacacattgccatagataagcccagccaaaccaccaccaataagaggcccagcccaatagatccagttgtcatggaaatttccactaacaactgc |
4189093 |
T |
|
| Q |
187 |
aggcccgaatgaacgtgccggattcattgacccaccagagaatggtcctgcagctaagatattggcaccaacaatcaaaccaatagcaattggtgcaatt |
286 |
Q |
| |
|
|||||| || || | |||||| ||||||||||| ||||||||||| |||||||| || || |||||||||||||| |||||||| ||||| ||||||||| |
|
|
| T |
4189094 |
aggcccaaaagatcttgccgggttcattgacccgccagagaatgggcctgcagccaatatgttggcaccaacaatgaaaccaatggcaatgggtgcaatt |
4189193 |
T |
|
| Q |
287 |
gtccctaatgaccctttcttaggatcagctgctgtggcatacactgtgtacaccaatccaaatgttatgataatctctgtcacaactcct |
376 |
Q |
| |
|
|| |||| |||||||||||| |||||||||||||||||||| |||||||| ||||| |||||||||||||| || || || ||||||||| |
|
|
| T |
4189194 |
gtgcctattgaccctttctttggatcagctgctgtggcataaactgtgtataccaaaccaaatgttatgattatttcagtaacaactcct |
4189283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 510 - 762
Target Start/End: Original strand, 4190049 - 4190301
Alignment:
| Q |
510 |
taaacataccaagcctcctgtggcatacttgaggagaaagcatgctactatggaaccaagaagttgtgcaatccagtagaagataccagtgaggatagtg |
609 |
Q |
| |
|
||||| |||||||||||| ||| || ||| ||| ||||| ||||| || ||||| |||||||| || ||||||||||||||||||||||||||||| || |
|
|
| T |
4190049 |
taaacttaccaagcctccagtgacaaactggagaagaaaacatgcaacaatggatccaagaagctgagcaatccagtagaagataccagtgaggatggta |
4190148 |
T |
|
| Q |
610 |
atctgtcccccaatagccaacccaaaggtcacagctgggttgacatgtccaccagatatgttggctccaacagaaacagcaacaaaaagagcaaaaccat |
709 |
Q |
| |
|
|||||||| |||| |||||| |||||||| ||||| ||||||||||| |||||||| |||||||| ||||| | ||||||||||||||| |||||||||| |
|
|
| T |
4190149 |
atctgtccaccaacagccaatccaaaggtgacagcagggttgacatgaccaccagaaatgttggcaccaactgcaacagcaacaaaaagtgcaaaaccat |
4190248 |
T |
|
| Q |
710 |
gacaaacagcaactgctactaatccagcaggatcaagagctgcacctgatgtc |
762 |
Q |
| |
|
| |||||||||||||||| ||| || || ||||||||||||||| |||||||| |
|
|
| T |
4190249 |
ggcaaacagcaactgctagtaaccctgctggatcaagagctgcatctgatgtc |
4190301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 1e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 137 - 363
Target Start/End: Complemental strand, 3930207 - 3929981
Alignment:
| Q |
137 |
ggtccaacccaatagatccagttgttatggtagtcaccacttacaaccgcaggcccgaatgaacgtgccggattcattgacccaccagagaatggtcctg |
236 |
Q |
| |
|
||||||||||||||||||||||| | | ||| ||||| || || || || |||||||| || ||||| |||||||| |||||| |||||| || | |
|
|
| T |
3930207 |
ggtccaacccaatagatccagttatcagcaaagtttccactaaccacagctgggccgaatgagcgagccgggttcattgaaccaccactgaatggaccgg |
3930108 |
T |
|
| Q |
237 |
cagctaagatattggcaccaacaatcaaaccaatagcaattggtgcaattgtccctaatgaccctttcttaggatcagctgctgtggcatacactgtgta |
336 |
Q |
| |
|
| |||||||| |||||||| |||| || ||||||||||| ||||||||||| || | ||| || || || || ||||||||||||||||| || ||||| |
|
|
| T |
3930107 |
cggctaagatgttggcaccgacaacgaacccaatagcaatgggtgcaattgttccaattgagccctttttggggtcagctgctgtggcataaacagtgta |
3930008 |
T |
|
| Q |
337 |
caccaatccaaatgttatgataatctc |
363 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
3930007 |
aaccaatccaaatgttatgataatctc |
3929981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 559 - 675
Target Start/End: Complemental strand, 3929665 - 3929549
Alignment:
| Q |
559 |
atggaaccaagaagttgtgcaatccagtagaagataccagtgaggatagtgatctgtcccccaatagccaacccaaaggtcacagctgggttgacatgtc |
658 |
Q |
| |
|
||||| ||||| | ||| |||||||| ||||||| |||||| ||||| ||||| | || ||||| || || ||||| || ||||||||||| | ||||| |
|
|
| T |
3929665 |
atggagccaagcaattgggcaatccaatagaagagaccagttaggatggtgatgttgcctccaatggctaatccaaaagtaacagctgggttcaaatgtc |
3929566 |
T |
|
| Q |
659 |
caccagatatgttggct |
675 |
Q |
| |
|
|||| || ||||||||| |
|
|
| T |
3929565 |
cacctgagatgttggct |
3929549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 631 - 704
Target Start/End: Complemental strand, 23339534 - 23339461
Alignment:
| Q |
631 |
ccaaaggtcacagctgggttgacatgtccaccagatatgttggctccaacagaaacagcaacaaaaagagcaaa |
704 |
Q |
| |
|
||||| || ||||| |||||||||||||||||||| ||||| || |||||||| |||||||||||||| ||||| |
|
|
| T |
23339534 |
ccaaaagtgacagcagggttgacatgtccaccagaaatgttagcaccaacagagacagcaacaaaaagtgcaaa |
23339461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 646 - 695
Target Start/End: Complemental strand, 7655635 - 7655586
Alignment:
| Q |
646 |
gggttgacatgtccaccagatatgttggctccaacagaaacagcaacaaa |
695 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
7655635 |
gggttcacatgtccaccagatatgtttgctccaacagaaacggcaacaaa |
7655586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 634 - 701
Target Start/End: Original strand, 41418460 - 41418527
Alignment:
| Q |
634 |
aaggtcacagctgggttgacatgtccaccagatatgttggctccaacagaaacagcaacaaaaagagc |
701 |
Q |
| |
|
||||| ||||| ||||||||||||||||| || ||||| || ||||| || ||||||||||| ||||| |
|
|
| T |
41418460 |
aaggtgacagcggggttgacatgtccaccggagatgttagcaccaacggagacagcaacaaagagagc |
41418527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 646 - 695
Target Start/End: Original strand, 52103081 - 52103130
Alignment:
| Q |
646 |
gggttgacatgtccaccagatatgttggctccaacagaaacagcaacaaa |
695 |
Q |
| |
|
||||| |||||||||||||| ||||| || |||||||||||||| ||||| |
|
|
| T |
52103081 |
gggttcacatgtccaccagaaatgtttgcaccaacagaaacagccacaaa |
52103130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University