View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4402_high_42 (Length: 311)
Name: NF4402_high_42
Description: NF4402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4402_high_42 |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 7 - 296
Target Start/End: Original strand, 38270376 - 38270665
Alignment:
| Q |
7 |
aaattattctcagcttctccactttcaaactttatgtccttggaaaaagctttactggattcatttcacctcgactcagatgaatccaaaaatgaaagca |
106 |
Q |
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| T |
38270376 |
aaattattctcagcttctccactttcaaactttatgtccttggaaaaagctttactggattcatttcgcctcgactcagatgaatccaaaaatgaaagca |
38270475 |
T |
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| Q |
107 |
attttatgggcaaggcatccctaactttacgcgctactaggtgaccgtatggaccatggccatcaaacacaccacagaagatcgcatcttctgacacaaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38270476 |
attttatgggcaaggcatccctaactttacgcgctactaggtgaccgtatggaccatggccatcaaacacaccacagaagatcgcatcttctgacacaaa |
38270575 |
T |
|
| Q |
207 |
atcctaaagaaaacaaagatcaaaactaggatgtaaatttcaaaaattaaccaagattccaagtctcacttcatttaatgagaatcaaac |
296 |
Q |
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| T |
38270576 |
atcctaaagaaaacaaagatcaaaactaggatgtaaatttcaaaaattaaccaagattccaagtctctcttcatttaatgagaatcaaac |
38270665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 95 - 212
Target Start/End: Complemental strand, 14960682 - 14960565
Alignment:
| Q |
95 |
aaaatgaaagcaattttatgggcaaggcatccctaactttacgcgctactaggtgaccgtatggaccatggccatcaaacacaccacagaagatcgcatc |
194 |
Q |
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|||||||||||||||||| ||||| | |||||| ||||||||||| || || ||||| | ||||||||| ||||| || |||||||| || |||| ||| |
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| T |
14960682 |
aaaatgaaagcaattttactggcaatgtatccctcactttacgcgcaaccagatgaccttgtggaccatgaccatcgaagacaccacaaaatatcgtatc |
14960583 |
T |
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| Q |
195 |
ttctgacacaaaatccta |
212 |
Q |
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||| |||| |||||||| |
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| T |
14960582 |
ttcggacatgaaatccta |
14960565 |
T |
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