View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4402_high_46 (Length: 279)
Name: NF4402_high_46
Description: NF4402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4402_high_46 |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 12 - 263
Target Start/End: Original strand, 36465036 - 36465287
Alignment:
| Q |
12 |
acctgtgaaaaatattagtatcaaagatgttatcatccagtcaggaaaaatgacattaaaagcaacaccaagactgattccaagcattaacattggttga |
111 |
Q |
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| T |
36465036 |
acctgtgaaaaatattagtatcaaagatgttatcatccagtcaggaaaaatgacattaaaagcaacaccaagactgattccaagcattaacattggttga |
36465135 |
T |
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| Q |
112 |
aaaagaagtgctaaatcatagtcaatcacaggcaggtcaagtgttggatgtctttgcctcaagttgtataaaacagttgctcctgctccacctgtaatca |
211 |
Q |
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| T |
36465136 |
aaaagaagtgctaaatcatagtcaatcacaggcaggtcaagtgttgggtgtctttgcctcaagttgtataaaacagttgctcctgctccacctgtaatca |
36465235 |
T |
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| Q |
212 |
tgccttcaccaaacaaacaaaaatccatgttatctattttaatagtgaaatg |
263 |
Q |
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| T |
36465236 |
tgccttcaccaaacaaacaaaaatccatgttatctattttaatagagaaatg |
36465287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 16 - 232
Target Start/End: Original strand, 36474218 - 36474436
Alignment:
| Q |
16 |
gtgaaaaatattagtatcaaagatgttatcatccagtcaggaaaaatgacattaaaagcaacaccaagactgattccaagcattaacattggttgaaaaa |
115 |
Q |
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||||||||||| | || ||||| ||||| |||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36474218 |
gtgaaaaatatgattagcaaagttgttaacatccagtcagggaaaatgagattgaaagcaacaccaagactgattccaagcattaacattggttggaaaa |
36474317 |
T |
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| Q |
116 |
gaagtgctaaatcatagtcaatcacaggcaggtcaagtgttggatgtctttgcctcaagttgtataaaacagttgctcctgctccacctgtaatcatgcc |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||| ||||||||| | |
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| T |
36474318 |
gaagtgctaaatcatagtcaatcacaggcaggtcaagtgttgggtgtcttttcttcaagttgtataaaacagttgctcctgctccaccagtaatcatgac |
36474417 |
T |
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| Q |
216 |
tt--caccaaacaaacaaa |
232 |
Q |
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| T |
36474418 |
ttcacaccaaacaaacaaa |
36474436 |
T |
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