View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4402_high_54 (Length: 242)

Name: NF4402_high_54
Description: NF4402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4402_high_54
NF4402_high_54
[»] chr2 (3 HSPs)
chr2 (108-172)||(26305894-26305958)
chr2 (12-82)||(26305828-26305898)
chr2 (168-221)||(26305987-26306040)


Alignment Details
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 108 - 172
Target Start/End: Original strand, 26305894 - 26305958
Alignment:
Q  108 ttgtgtaccgcagttttgaactatgtgtgacagaatacacatttaagaacaaacattacgatcag 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26305894 ttgtgtaccgcagttttgaactatgtgtgacagaatacacatttaagaacaaacattacgatcag 26305958  T

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Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 26305828 - 26305898
Alignment:
Q  12 acagacagaagaatcaattgtgacagtatagttctaaaatgctgacaaatgcagctacaaatatgattgtg 82  Q
    ||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26305828 acagacaaaagaagcaattgtgacagcatagttctaaaatgctgacaaatgcagctacaaatatgattgtg 26305898  T

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Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 26305987 - 26306040
Alignment:
Q  168 atcagagccagtacagaacaaattgaatgaaaatatggaacataaacgagtttt 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26305987 atcagagccagtacagaacaaattgaatgaaaatatggaacataaacgagtttt 26306040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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