View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4402_high_57 (Length: 238)
Name: NF4402_high_57
Description: NF4402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4402_high_57 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 40175338 - 40175562
Alignment:
| Q |
13 |
catcaataccagtagaagtatttcacaaccgaactcacatactattacaagaaatgctagcaaaacactgaattggatattattgaatacaatctttgtg |
112 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||| | |
|
|
| T |
40175338 |
catcaataccagtagaagtatttcacaactgaactcacatactattacaagaaatgctagcaaaatactgaattggacattattgaatacaatatttggg |
40175437 |
T |
|
| Q |
113 |
atagacatatttttcaaagagtgatctattcgccagatgactaaattgactttttgagaaaatatcacaagtgtttaaaaatgtatc-aaaagtgtttct |
211 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||| |
|
|
| T |
40175438 |
attgacatatttttcaaagagtgatctattcgccagacgactaaattgactttttgagaaaatatcataagtttttaaaaatgtatcaaaaagtgtttct |
40175537 |
T |
|
| Q |
212 |
actattcaaatacttgcggtgtccg |
236 |
Q |
| |
|
||||||||||||| ||||||||||| |
|
|
| T |
40175538 |
actattcaaatacctgcggtgtccg |
40175562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University