View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4402_high_64 (Length: 231)
Name: NF4402_high_64
Description: NF4402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4402_high_64 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 7 - 217
Target Start/End: Complemental strand, 42722739 - 42722529
Alignment:
| Q |
7 |
gggtccattgacataagtcattacacgttgagaggaaacaaccagagacgttaccatgaataagggcacttaactagtgtagataagaaaacagacttca |
106 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42722739 |
gggtccattgacataagtcattacacattgagaggaaacaaccagagacgttaccatgaataagggcacttaactagtgtagataagaaaacagacttca |
42722640 |
T |
|
| Q |
107 |
atatattacgaagataacactcttgccaagtaacgnnnnnnnnnnnnnnnnnnntggatagaaaacagacccaagcaactattagacagaatgccactga |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42722639 |
atatattacgaagataacactcttgccaagtaacgaaaaaatgaatgaaaaaaatggatagaaaacagacccaagcaactattagacagaatgccactga |
42722540 |
T |
|
| Q |
207 |
tgccaattgat |
217 |
Q |
| |
|
||||||||||| |
|
|
| T |
42722539 |
tgccaattgat |
42722529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University