View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4402_high_66 (Length: 228)
Name: NF4402_high_66
Description: NF4402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4402_high_66 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 54015510 - 54015296
Alignment:
| Q |
1 |
ttctccttataaatatgcgatatgattggagagtgtaggtagatacttaacaaagttacggttcaaatccagagagatacactactttactttcccatta |
100 |
Q |
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| T |
54015510 |
ttctccttataaatatgcgatgtgattggagagtgtaggtagatacttaacaaagttacggttcaaatccagagagatacactactttactttcccatta |
54015411 |
T |
|
| Q |
101 |
acaaggaaacaatttcattgcactaccaaaccccaaacctatcctacatacatacccattggttgcttatcccttcctttctgatttattctattttggg |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54015410 |
acaaggaaacaatttcattgcactacca-------aacctatcctacatacatacccattggttgcttatcccttcctttctgatttattctattttggg |
54015318 |
T |
|
| Q |
201 |
tattttaatcctctctgttcct |
222 |
Q |
| |
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||||||||||||| || ||||| |
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| T |
54015317 |
tattttaatcctcccttttcct |
54015296 |
T |
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