View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4402_high_67 (Length: 224)
Name: NF4402_high_67
Description: NF4402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4402_high_67 |
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Alignment Details
Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 28 - 210
Target Start/End: Complemental strand, 8425432 - 8425250
Alignment:
| Q |
28 |
ctagaaaaagaaactattatgcagaagatcctgtaattatcgggaataatgtctataccttcggttaagttgcatataatatcaatttcctcatttgata |
127 |
Q |
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| T |
8425432 |
ctagaaaaagaaactattatgcagaagatcctgtaattatcgggaataatgtctataccttcggttaagttgcatataatatcaatttcctcatttgata |
8425333 |
T |
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| Q |
128 |
gcttgaataatccatccttctctaaaaggctacgtgcgatccaagctcttgcctctaaaataccaagcaaatgtgttagttag |
210 |
Q |
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| T |
8425332 |
gcttgaataatccatccttctctaaaaggctacgtgcgatccaagctcttgcctctaaaataccaagcaaatgtgttagttag |
8425250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 47 - 193
Target Start/End: Original strand, 8397072 - 8397218
Alignment:
| Q |
47 |
tgcagaagatcctgtaattatcgggaataatgtctataccttcggttaagttgcatataatatcaatttcctcatttgatagcttgaataatccatcctt |
146 |
Q |
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| T |
8397072 |
tgcagaagatactgtaattaataggaatagtgtcaataccttctgttaagttgcatataatctccatttcctcatttgatatcttgaataagccatcctt |
8397171 |
T |
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| Q |
147 |
ctctaaaaggctacgtgcgatccaagctcttgcctctaaaataccaa |
193 |
Q |
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| T |
8397172 |
ctctaaaaggttacgtacaatccaagctcttgcctctaaaagaccaa |
8397218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 53 - 210
Target Start/End: Original strand, 8392169 - 8392326
Alignment:
| Q |
53 |
agatcctgtaattatcgggaataatgtctataccttcggttaagttgcatataatatcaatttcctcatttgatagcttgaataatccatccttctctaa |
152 |
Q |
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| T |
8392169 |
agatactgtaattaactggcataatgtcaataccttccgttaagtcacatataatctccatttcctcgtttgatagcttgaatagttcatccttctctaa |
8392268 |
T |
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| Q |
153 |
aaggctacgtgcgatccaagctcttgcctctaaaataccaagcaaatgtgttagttag |
210 |
Q |
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| T |
8392269 |
aagattacgtgcaatccaagctcttgcgtctgaaataccaagtaaataagttagttag |
8392326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 59 - 189
Target Start/End: Complemental strand, 8410042 - 8409912
Alignment:
| Q |
59 |
tgtaattatcgggaataatgtctataccttcggttaagttgcatataatatcaatttcctcatttgatagcttgaataatccatccttctctaaaaggct |
158 |
Q |
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| T |
8410042 |
tgtaattaactggaataatgtcaataccatccgttaagtcacgtataatctccatttcctcatttgatagcttgaataatccatccttctctaaaagatt |
8409943 |
T |
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| Q |
159 |
acgtgcgatccaagctcttgcctctaaaata |
189 |
Q |
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| T |
8409942 |
acgtgcaatccaagctcttgcgtctgaaata |
8409912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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