View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4402_high_68 (Length: 220)

Name: NF4402_high_68
Description: NF4402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4402_high_68
NF4402_high_68
[»] chr5 (14 HSPs)
chr5 (1-210)||(33698556-33698769)
chr5 (1-62)||(33679839-33679900)
chr5 (1-56)||(33904419-33904474)
chr5 (1-58)||(33865910-33865967)
chr5 (138-194)||(33734537-33734593)
chr5 (3-58)||(33734329-33734384)
chr5 (148-194)||(33904606-33904652)
chr5 (157-209)||(33680120-33680172)
chr5 (3-55)||(33762791-33762843)
chr5 (3-58)||(33748801-33748856)
chr5 (3-58)||(33821659-33821714)
chr5 (3-58)||(33834921-33834976)
chr5 (146-194)||(33867043-33867091)
chr5 (138-194)||(33763367-33763423)
[»] chr8 (1 HSPs)
chr8 (1-58)||(21305895-21305952)
[»] scaffold0247 (2 HSPs)
scaffold0247 (3-55)||(22155-22207)
scaffold0247 (138-193)||(21958-22013)
[»] scaffold0001 (2 HSPs)
scaffold0001 (1-56)||(148804-148859)
scaffold0001 (148-194)||(149007-149053)
[»] chr7 (2 HSPs)
chr7 (11-56)||(5471194-5471239)
chr7 (157-194)||(5470212-5470249)
[»] scaffold0023 (1 HSPs)
scaffold0023 (6-58)||(114205-114257)
[»] scaffold0193 (1 HSPs)
scaffold0193 (3-58)||(25216-25271)


Alignment Details
Target: chr5 (Bit Score: 169; Significance: 8e-91; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 33698556 - 33698769
Alignment:
Q  1 tcttcacatcattagctgttctacccggaagccttgcagcaatcagcgaccatctatacatacaaacat----atattatactcttacctaggtcaccaa 96  Q
    ||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||| ||||    ||||||||||||||| |||||||||||    
T  33698556 tcttcacatcattagctgtcctacccggaagccttgcagcaatcaaagaccatctatacatacatacatacatatattatactcttacttaggtcaccaa 33698655  T
Q  97 aaatttaatttgataggtaaccaaaacaaaattaacttgatagcttacttgttccctagaagtttgtgtaaccttagaatcatatcaatttcatcctcgg 196  Q
    || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33698656 aagtttaacttgataggtaaccaaaacaaaattaacttgatagcttacttgttccctagaagtttgtgtaaccttagaatcatatcaatttcatcctcgg 33698755  T
Q  197 cgaaactttctctg 210  Q
    ||||||||||||||    
T  33698756 cgaaactttctctg 33698769  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 33679839 - 33679900
Alignment:
Q  1 tcttcacatcattagctgttctacccggaagccttgcagcaatcagcgaccatctatacata 62  Q
    |||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||    
T  33679839 tcttcacatcattagctgttctacccggaagcctcgcagcaatcaatgaccatctatacata 33679900  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 33904419 - 33904474
Alignment:
Q  1 tcttcacatcattagctgttctacccggaagccttgcagcaatcagcgaccatcta 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  33904419 tcttcacatcattagctgttctacccggaagccttgcagcaatcaatgaccatcta 33904474  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 33865910 - 33865967
Alignment:
Q  1 tcttcacatcattagctgttctacccggaagccttgcagcaatcagcgaccatctata 58  Q
    |||||||||||||||||||||||||||| || |||||||||||||  |||||||||||    
T  33865910 tcttcacatcattagctgttctacccgggagtcttgcagcaatcaatgaccatctata 33865967  T

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Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 33734537 - 33734593
Alignment:
Q  138 agcttacttgttccctagaagtttgtgtaaccttagaatcatatcaatttcatcctc 194  Q
    ||||||| | |||||||||||||||||||||||||| |||||||||| |||||||||    
T  33734537 agcttacctattccctagaagtttgtgtaaccttaggatcatatcaacttcatcctc 33734593  T

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Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 33734329 - 33734384
Alignment:
Q  3 ttcacatcattagctgttctacccggaagccttgcagcaatcagcgaccatctata 58  Q
    |||||||||||||| |||||||| |||||||||||||||||||  |||||||||||    
T  33734329 ttcacatcattagcagttctaccaggaagccttgcagcaatcaatgaccatctata 33734384  T

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Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 148 - 194
Target Start/End: Original strand, 33904606 - 33904652
Alignment:
Q  148 ttccctagaagtttgtgtaaccttagaatcatatcaatttcatcctc 194  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||    
T  33904606 ttccctagaagtttgtgtaaccttagcatcatatcaacttcatcctc 33904652  T

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Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 209
Target Start/End: Original strand, 33680120 - 33680172
Alignment:
Q  157 agtttgtgtaaccttagaatcatatcaatttcatcctcggcgaaactttctct 209  Q
    |||||||||| |||||||||||||||||||||||| | || ||||||||||||    
T  33680120 agtttgtgtagccttagaatcatatcaatttcatcatgggagaaactttctct 33680172  T

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Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 33762791 - 33762843
Alignment:
Q  3 ttcacatcattagctgttctacccggaagccttgcagcaatcagcgaccatct 55  Q
    ||||||||||| ||||||||||| |||||||||||||||||||  ||||||||    
T  33762791 ttcacatcattcgctgttctaccgggaagccttgcagcaatcaatgaccatct 33762843  T

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Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 33748801 - 33748856
Alignment:
Q  3 ttcacatcattagctgttctacccggaagccttgcagcaatcagcgaccatctata 58  Q
    |||||||||||||||||||||||  |||| ||||||||||||| || |||||||||    
T  33748801 ttcacatcattagctgttctaccttgaagtcttgcagcaatcaacgtccatctata 33748856  T

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Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 33821659 - 33821714
Alignment:
Q  3 ttcacatcattagctgttctacccggaagccttgcagcaatcagcgaccatctata 58  Q
    |||||||||||||| |||||||  |||||||||||||||||||  |||||||||||    
T  33821659 ttcacatcattagccgttctactaggaagccttgcagcaatcaatgaccatctata 33821714  T

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Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 33834921 - 33834976
Alignment:
Q  3 ttcacatcattagctgttctacccggaagccttgcagcaatcagcgaccatctata 58  Q
    |||||||||||||||||||||||  |||| ||||||||||||| || |||||||||    
T  33834921 ttcacatcattagctgttctaccttgaagtcttgcagcaatcaacgtccatctata 33834976  T

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Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 194
Target Start/End: Original strand, 33867043 - 33867091
Alignment:
Q  146 tgttccctagaagtttgtgtaaccttagaatcatatcaatttcatcctc 194  Q
    ||||||||| ||| ||||||||||||| ||||||||||| |||||||||    
T  33867043 tgttccctaaaagcttgtgtaaccttaaaatcatatcaacttcatcctc 33867091  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 33763367 - 33763423
Alignment:
Q  138 agcttacttgttccctagaagtttgtgtaaccttagaatcatatcaatttcatcctc 194  Q
    ||||||| | || ||||||||||| ||||||||||| |||| ||||| |||||||||    
T  33763367 agcttacctattacctagaagtttttgtaaccttaggatcagatcaacttcatcctc 33763423  T

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Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 21305895 - 21305952
Alignment:
Q  1 tcttcacatcattagctgttctacccggaagccttgcagcaatcagcgaccatctata 58  Q
    ||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||    
T  21305895 tcttcacatcattagctgttctacccggaagccttccagcaatcaatgaccatctata 21305952  T

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Target: scaffold0247 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 22207 - 22155
Alignment:
Q  3 ttcacatcattagctgttctacccggaagccttgcagcaatcagcgaccatct 55  Q
    ||||||||||||||||||||||| ||||||||| |||||||||  ||||||||    
T  22207 ttcacatcattagctgttctacctggaagccttccagcaatcaatgaccatct 22155  T

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Target: scaffold0247; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 193
Target Start/End: Complemental strand, 22013 - 21958
Alignment:
Q  138 agcttacttgttccctagaagtttgtgtaaccttagaatcatatcaatttcatcct 193  Q
    ||||||| | || |||||||| ||||||||||||||||||| ||||| ||||||||    
T  22013 agcttacctattgcctagaaggttgtgtaaccttagaatcaaatcaacttcatcct 21958  T

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Target: scaffold0001 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 148804 - 148859
Alignment:
Q  1 tcttcacatcattagctgttctacccggaagccttgcagcaatcagcgaccatcta 56  Q
    |||| ||||||||||||||||| |||||||||||| |||||||||  |||||||||    
T  148804 tctttacatcattagctgttcttcccggaagccttccagcaatcaatgaccatcta 148859  T

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Target: scaffold0001; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 148 - 194
Target Start/End: Original strand, 149007 - 149053
Alignment:
Q  148 ttccctagaagtttgtgtaaccttagaatcatatcaatttcatcctc 194  Q
    |||||||||||||||||||||||||| |||||||| | |||||||||    
T  149007 ttccctagaagtttgtgtaaccttaggatcatatcgacttcatcctc 149053  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 5471239 - 5471194
Alignment:
Q  11 attagctgttctacccggaagccttgcagcaatcagcgaccatcta 56  Q
    ||||||||||||||||||||||||| |||||||||  |||||||||    
T  5471239 attagctgttctacccggaagccttccagcaatcaatgaccatcta 5471194  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 157 - 194
Target Start/End: Complemental strand, 5470249 - 5470212
Alignment:
Q  157 agtttgtgtaaccttagaatcatatcaatttcatcctc 194  Q
    ||||||||||||||||| |||||||||| |||||||||    
T  5470249 agtttgtgtaaccttaggatcatatcaacttcatcctc 5470212  T

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Target: scaffold0023 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 114257 - 114205
Alignment:
Q  6 acatcattagctgttctacccggaagccttgcagcaatcagcgaccatctata 58  Q
    |||||||||||||||||| ||||||||||| | |||||||  |||||||||||    
T  114257 acatcattagctgttctagccggaagccttcccgcaatcaatgaccatctata 114205  T

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Target: scaffold0193 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 25271 - 25216
Alignment:
Q  3 ttcacatcattagctgttctacccggaagccttgcagcaatcagcgaccatctata 58  Q
    |||||||||||||||| ||||||| |||| |||||||||||||  | |||||||||    
T  25271 ttcacatcattagctgatctaccctgaagtcttgcagcaatcaatgtccatctata 25216  T

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