View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4402_high_73 (Length: 202)
Name: NF4402_high_73
Description: NF4402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4402_high_73 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 13 - 187
Target Start/End: Original strand, 45957893 - 45958067
Alignment:
| Q |
13 |
tgaagaagatgattgttagtgataatagtaagaagaagataaagaagaaaaatggtctttttgtatttccacttcattcaagggtaacaggagcaagata |
112 |
Q |
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| T |
45957893 |
tgaagaagatgattgttagtgataatagtaagaagaagataaagaagaaaaatggtctttttgtatttccacttcattcaagggtaacaggagcaagata |
45957992 |
T |
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| Q |
113 |
tccttatctatggatgagaacagcacaagagaatggttggcatgttttgattgatgcttgtgcattaggaccaaa |
187 |
Q |
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| T |
45957993 |
tccttatctatggatgagaacagcacaagagaatggttggcatgttttgattgatgcttgtgcattaggaccaaa |
45958067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 1e-30; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 54 - 184
Target Start/End: Original strand, 22687432 - 22687565
Alignment:
| Q |
54 |
aagaagaaaaat---ggtctttttgtatttccacttcattcaagggtaacaggagcaagatatccttatctatggatgagaacagcacaagagaatggtt |
150 |
Q |
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| T |
22687432 |
aagaagaaaaataagggtctttttgttttgccacttcattcaagagtaacaggagcaagatatccttatatttggataagtatagcgaaagagaatggtt |
22687531 |
T |
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| Q |
151 |
ggcatgttttgattgatgcttgtgcattaggacc |
184 |
Q |
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| T |
22687532 |
ggaatgttttggttgatgcatgtgcattaggacc |
22687565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 54 - 184
Target Start/End: Complemental strand, 22751636 - 22751503
Alignment:
| Q |
54 |
aagaagaaaaat---ggtctttttgtatttccacttcattcaagggtaacaggagcaagatatccttatctatggatgagaacagcacaagagaatggtt |
150 |
Q |
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| T |
22751636 |
aagaagaaaaataagggtctttttgttttgccacttcattcaagagtaacaggagcaagatatccttatatttggataagtatagcgaaagagaatggtt |
22751537 |
T |
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| Q |
151 |
ggcatgttttgattgatgcttgtgcattaggacc |
184 |
Q |
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| T |
22751536 |
ggaatgttttggttgatgcatgtgcattaggacc |
22751503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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