View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4402_low_1 (Length: 1152)

Name: NF4402_low_1
Description: NF4402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4402_low_1
NF4402_low_1
[»] chr1 (11 HSPs)
chr1 (383-699)||(18431242-18431558)
chr1 (383-602)||(22788094-22788310)
chr1 (521-602)||(1014387-1014468)
chr1 (599-663)||(1014872-1014936)
chr1 (187-242)||(18431702-18431757)
chr1 (184-242)||(6154642-6154700)
chr1 (661-702)||(22787424-22787465)
chr1 (661-701)||(11943666-11943706)
chr1 (415-483)||(1014321-1014386)
chr1 (661-704)||(5458618-5458661)
chr1 (665-704)||(6154068-6154107)
[»] chr7 (9 HSPs)
chr7 (383-699)||(46437506-46437822)
chr7 (514-602)||(39780552-39780640)
chr7 (599-657)||(39786133-39786191)
chr7 (408-483)||(39780485-39780557)
chr7 (661-702)||(38663364-38663405)
chr7 (665-704)||(39781160-39781199)
chr7 (665-702)||(43266096-43266133)
chr7 (664-704)||(42896847-42896887)
chr7 (661-702)||(36616865-36616906)
[»] chr2 (5 HSPs)
chr2 (383-699)||(16915978-16916291)
chr2 (514-581)||(4076303-4076370)
chr2 (408-483)||(4076365-4076437)
chr2 (187-242)||(16916433-16916488)
chr2 (484-525)||(2819791-2819832)
[»] chr8 (8 HSPs)
chr8 (383-602)||(28535356-28535572)
chr8 (514-602)||(45483709-45483797)
chr8 (408-502)||(11463695-11463789)
chr8 (599-663)||(45484062-45484126)
chr8 (535-602)||(11463630-11463697)
chr8 (408-483)||(45483642-45483714)
chr8 (661-702)||(45486353-45486394)
chr8 (665-702)||(11462730-11462767)
[»] chr3 (24 HSPs)
chr3 (930-1145)||(37130752-37130967)
chr3 (383-602)||(52118488-52118704)
chr3 (383-529)||(26555669-26555812)
chr3 (514-602)||(25069586-25069674)
chr3 (514-602)||(26905661-26905749)
chr3 (514-602)||(36615291-36615379)
chr3 (514-602)||(28211380-28211468)
chr3 (525-602)||(26556955-26557032)
chr3 (599-663)||(26905332-26905396)
chr3 (599-663)||(36615644-36615708)
chr3 (735-818)||(37130547-37130630)
chr3 (408-483)||(26905744-26905816)
chr3 (408-483)||(36615224-36615296)
chr3 (1029-1092)||(37124375-37124438)
chr3 (408-483)||(25069519-25069591)
chr3 (661-704)||(25070869-25070912)
chr3 (661-703)||(26903063-26903105)
chr3 (661-703)||(36617935-36617977)
chr3 (661-702)||(26557644-26557685)
chr3 (661-702)||(28210880-28210921)
chr3 (408-483)||(28211463-28211535)
chr3 (661-702)||(52119126-52119167)
chr3 (408-461)||(2125523-2125573)
chr3 (665-702)||(2125769-2125806)
[»] chr6 (13 HSPs)
chr6 (383-602)||(16693162-16693380)
chr6 (538-704)||(5013726-5013891)
chr6 (383-500)||(5013888-5014005)
chr6 (514-602)||(18819423-18819511)
chr6 (514-602)||(24904329-24904417)
chr6 (599-663)||(18819094-18819158)
chr6 (599-663)||(24903862-24903926)
chr6 (408-483)||(18819506-18819578)
chr6 (661-702)||(16693607-16693648)
chr6 (408-483)||(24904412-24904484)
chr6 (661-703)||(18816825-18816867)
chr6 (187-242)||(5014160-5014215)
chr6 (661-703)||(595770-595812)
[»] chr4 (7 HSPs)
chr4 (408-602)||(45067438-45067632)
chr4 (408-599)||(8903451-8903642)
chr4 (599-663)||(8904153-8904217)
chr4 (599-663)||(45066030-45066094)
chr4 (661-695)||(45065888-45065922)
chr4 (665-698)||(8904430-8904463)
chr4 (187-239)||(8903210-8903262)
[»] chr5 (14 HSPs)
chr5 (424-602)||(18113464-18113642)
chr5 (424-600)||(424471-424647)
chr5 (514-602)||(25634141-25634229)
chr5 (517-602)||(17074882-17074967)
chr5 (183-242)||(424823-424882)
chr5 (600-659)||(17075326-17075385)
chr5 (184-240)||(18113827-18113883)
chr5 (408-477)||(17074816-17074885)
chr5 (408-483)||(25634224-25634296)
chr5 (665-702)||(9047488-9047525)
chr5 (665-701)||(423987-424023)
chr5 (665-703)||(18108361-18108399)
chr5 (664-701)||(17077002-17077039)
chr5 (663-704)||(13475552-13475593)
[»] scaffold0571 (1 HSPs)
scaffold0571 (542-702)||(1-161)


Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 383 - 699
Target Start/End: Complemental strand, 18431558 - 18431242
Alignment:
Q  383 acaaatcacaattcacagtcgtctttcttctcacaacaaacaaacaaacctctcattcttccactctcatcagtcagcagcatcattttctctcttaact 482  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||    
T  18431558 acaaatcacaattcacaatcgtctttcttctcacaacaaacaaacaaacctctccttcttccactctcatcagtcagcaacatcattttctctcttcact 18431459  T
Q  483 ccttcttcaaatctagtgtatctctcagttctcactctaagtctaagccaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaa 582  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18431458 ccttcttcaaatctagtgtatctctcagttctcactctaagtctaagtgaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaa 18431359  T
Q  583 ttgcttttttggggttttaggcctccaatttcaagctatcatcctgacatcaaagatgaggtacgtaaagcttacttgaaattttgccacactaatatga 682  Q
    ||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  18431358 ttgtttttttagggttttaggcctccaatttcaagctatcatcctgacatccaagatgaggtacgtaaagcttacttgaaattttgccacactaatatga 18431259  T
Q  683 aatgtctagatccgccc 699  Q
    |||||||||||||||||    
T  18431258 aatgtctagatccgccc 18431242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 178; E-Value: 2e-95
Query Start/End: Original strand, 383 - 602
Target Start/End: Complemental strand, 22788310 - 22788094
Alignment:
Q  383 acaaatcacaattcacagtcgtctttcttctcacaacaaacaaacaaacctctcattcttccactctcatcagtcagcagcatcattttctctcttaact 482  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||| |||    
T  22788310 acaaatcacaattcacaatcttctttcttctcacaacaaacaaacaaacctctc---cttccactctcatcagtcagcagcatcattttctctcttcact 22788214  T
Q  483 ccttcttcaaatctagtgtatctctcagttctcactctaagtctaagccaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaa 582  Q
    |||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22788213 ccttcttcaattctagtgtatctctcaattctcactctaagtctaaaccaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaa 22788114  T
Q  583 ttgcttttttggggttttag 602  Q
    |||||||||| |||||||||    
T  22788113 ttgcttttttagggttttag 22788094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 521 - 602
Target Start/End: Original strand, 1014387 - 1014468
Alignment:
Q  521 aagtctaagccaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttag 602  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  1014387 aagtctaagccaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgattttttagggttttag 1014468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 599 - 663
Target Start/End: Original strand, 1014872 - 1014936
Alignment:
Q  599 ttaggcctccaatttcaagctatcatcctgacatcaaagatgaggtacgtaaagcttacttgaaa 663  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  1014872 ttaggcctccaatttcaagctatcatcctgacatccaagatgaggtacgtaaagcttacttgaaa 1014936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 187 - 242
Target Start/End: Complemental strand, 18431757 - 18431702
Alignment:
Q  187 gggcggatgtacattgaaacatgatgtggcagctgccacaccatattctagcctaa 242  Q
    ||||||||||| | ||||||||| ||||||||||||||||||| ||||||||||||    
T  18431757 gggcggatgtagagtgaaacatggtgtggcagctgccacaccagattctagcctaa 18431702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 6154700 - 6154642
Alignment:
Q  184 catgggcggatgtacattgaaacatgatgtggcagctgccacaccatattctagcctaa 242  Q
    ||||||||||||||| |||||||||| |||| ||||||| |||||| ||||||||||||    
T  6154700 catgggcggatgtacgttgaaacatggtgtgacagctgcaacaccagattctagcctaa 6154642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 661 - 702
Target Start/End: Complemental strand, 22787465 - 22787424
Alignment:
Q  661 aaattttgccacactaatatgaaatgtctagatccgcccctg 702  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  22787465 aaattttgccacactaatatgacatgtctagatccgcccctg 22787424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 661 - 701
Target Start/End: Complemental strand, 11943706 - 11943666
Alignment:
Q  661 aaattttgccacactaatatgaaatgtctagatccgcccct 701  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  11943706 aaattttgccacactaatatcaaatgtctagatccgcccct 11943666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 415 - 483
Target Start/End: Original strand, 1014321 - 1014386
Alignment:
Q  415 acaacaaacaaacaaacctctcattcttccactctcatcagtcagcagcatcattttctctcttaactc 483  Q
    ||||||||||||||||||||||   |||||||||||||| |||| || ||| |||||||||||| ||||    
T  1014321 acaacaaacaaacaaacctctc---cttccactctcatcggtcaacaacataattttctctcttcactc 1014386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 661 - 704
Target Start/End: Complemental strand, 5458661 - 5458618
Alignment:
Q  661 aaattttgccacactaatatgaaatgtctagatccgcccctgat 704  Q
    |||||||||||||| ||||| ||||||||| |||||||||||||    
T  5458661 aaattttgccacaccaatatcaaatgtctacatccgcccctgat 5458618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 665 - 704
Target Start/End: Complemental strand, 6154107 - 6154068
Alignment:
Q  665 tttgccacactaatatgaaatgtctagatccgcccctgat 704  Q
    ||||||||||||||||||||||||||||||| ||| ||||    
T  6154107 tttgccacactaatatgaaatgtctagatccacccatgat 6154068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 269; Significance: 1e-149; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-149
Query Start/End: Original strand, 383 - 699
Target Start/End: Original strand, 46437506 - 46437822
Alignment:
Q  383 acaaatcacaattcacagtcgtctttcttctcacaacaaacaaacaaacctctcattcttccactctcatcagtcagcagcatcattttctctcttaact 482  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||    
T  46437506 acaaaacacaattcacaatcgtctttcttctcacaacaaacaaacaaacctctcattcttccactctcatcaatcagcagcatcattttctctcttcact 46437605  T
Q  483 ccttcttcaaatctagtgtatctctcagttctcactctaagtctaagccaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaa 582  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  46437606 ccttcttcaaatctagtgtatctctcagttctcactctaagtctaagccaaggtaggtgaaatagtcaattgattctctactttctcattcattctacaa 46437705  T
Q  583 ttgcttttttggggttttaggcctccaatttcaagctatcatcctgacatcaaagatgaggtacgtaaagcttacttgaaattttgccacactaatatga 682  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||  ||||| |||||||||||||||||||||||||||||||| |    
T  46437706 ttgcttttttaggattttaggcctccaatttcaagctatcatcctgacatccaagatgcagtacgcaaagcttacttgaaattttgccacactaatataa 46437805  T
Q  683 aatgtctagatccgccc 699  Q
    |||||||||||||||||    
T  46437806 aatgtctagatccgccc 46437822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 514 - 602
Target Start/End: Original strand, 39780552 - 39780640
Alignment:
Q  514 tcactctaagtctaagccaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttag 602  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  39780552 tcactctaagtctaagccaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttagggttttag 39780640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 599 - 657
Target Start/End: Complemental strand, 39786191 - 39786133
Alignment:
Q  599 ttaggcctccaatttcaagctatcatcctgacatcaaagatgaggtacgtaaagcttac 657  Q
    |||||||||||||||||| |||||||||||||||  |||||||||||||||||||||||    
T  39786191 ttaggcctccaatttcaaactatcatcctgacattcaagatgaggtacgtaaagcttac 39786133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 408 - 483
Target Start/End: Original strand, 39780485 - 39780557
Alignment:
Q  408 tcttctcacaacaaacaaacaaacctctcattcttccactctcatcagtcagcagcatcattttctctcttaactc 483  Q
    |||||| ||||||||||||||||||||||   ||||||||||||||||||| || ||| |||||||||||| ||||    
T  39780485 tcttcttacaacaaacaaacaaacctctc---cttccactctcatcagtcaacaacataattttctctcttcactc 39780557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 661 - 702
Target Start/End: Original strand, 38663364 - 38663405
Alignment:
Q  661 aaattttgccacactaatatgaaatgtctagatccgcccctg 702  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  38663364 aaattttgccacactaatatgcaatgtctagatccgcccctg 38663405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 665 - 704
Target Start/End: Original strand, 39781160 - 39781199
Alignment:
Q  665 tttgccacactaatatgaaatgtctagatccgcccctgat 704  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  39781160 tttgccacactaatatgcaatgtctagatccgcccctgat 39781199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 665 - 702
Target Start/End: Original strand, 43266096 - 43266133
Alignment:
Q  665 tttgccacactaatatgaaatgtctagatccgcccctg 702  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  43266096 tttgccacactaatatgcaatgtctagatccgcccctg 43266133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 664 - 704
Target Start/End: Complemental strand, 42896887 - 42896847
Alignment:
Q  664 ttttgccacactaatatgaaatgtctagatccgcccctgat 704  Q
    ||||||||||| ||||| |||||||||||||||||||||||    
T  42896887 ttttgccacaccaatatcaaatgtctagatccgcccctgat 42896847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 661 - 702
Target Start/End: Complemental strand, 36616906 - 36616865
Alignment:
Q  661 aaattttgccacactaatatgaaatgtctagatccgcccctg 702  Q
    ||||||| |||||| ||||| |||||||||||||||||||||    
T  36616906 aaattttaccacaccaatatcaaatgtctagatccgcccctg 36616865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 383 - 699
Target Start/End: Complemental strand, 16916291 - 16915978
Alignment:
Q  383 acaaatcacaattcacagtcgtctttcttctcacaacaaacaaacaaacctctcattcttccactctcatcagtcagcagcatcattttctctcttaact 482  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||| |||    
T  16916291 acaaatcacaattcacaatcgtctttcttctcacaacaaacaaacaaacctctccttcttccactctcatcagtcagcaacaacattttctctcttcact 16916192  T
Q  483 ccttcttcaaatctagtgtatctctcagttctcactctaagtctaagccaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaa 582  Q
    |||||   |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16916191 ccttc---aaatctagtgtatctctcagttctcactctaagtctaagttaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaa 16916095  T
Q  583 ttgcttttttggggttttaggcctccaatttcaagctatcatcctgacatcaaagatgaggtacgtaaagcttacttgaaattttgccacactaatatga 682  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  16916094 ttgcttttttagggttttaggcctccaatttcaagctatcatcctgacatccaagatgaggtacgtaaagcttacttgaaattttgccacactaatatga 16915995  T
Q  683 aatgtctagatccgccc 699  Q
    |||||||| ||||||||    
T  16915994 aatgtctaaatccgccc 16915978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 9e-30
Query Start/End: Original strand, 514 - 581
Target Start/End: Complemental strand, 4076370 - 4076303
Alignment:
Q  514 tcactctaagtctaagccaaggtaagtgaaatagtcaattgattctctactttctcattcattctaca 581  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4076370 tcactctaagtctaagccaaggtaagtgaaatagtcaattgattctctactttctcattcattctaca 4076303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 408 - 483
Target Start/End: Complemental strand, 4076437 - 4076365
Alignment:
Q  408 tcttctcacaacaaacaaacaaacctctcattcttccactctcatcagtcagcagcatcattttctctcttaactc 483  Q
    |||||| |||||||||||||||||||||| |||   ||||||||||||||| || ||| |||||||||||| ||||    
T  4076437 tcttcttacaacaaacaaacaaacctctctttc---cactctcatcagtcaacaacataattttctctcttcactc 4076365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 242
Target Start/End: Complemental strand, 16916488 - 16916433
Alignment:
Q  187 gggcggatgtacattgaaacatgatgtggcagctgccacaccatattctagcctaa 242  Q
    ||||||||||| | ||||||||| |||| |||||||||||||| ||||||||||||    
T  16916488 gggcggatgtagagtgaaacatggtgtgtcagctgccacaccagattctagcctaa 16916433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 484 - 525
Target Start/End: Original strand, 2819791 - 2819832
Alignment:
Q  484 cttcttcaaatctagtgtatctctcagttctcactctaagtc 525  Q
    |||||||||| ||||| | |||||||||||||||||||||||    
T  2819791 cttcttcaaacctagtatttctctcagttctcactctaagtc 2819832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 178; Significance: 2e-95; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 178; E-Value: 2e-95
Query Start/End: Original strand, 383 - 602
Target Start/End: Original strand, 28535356 - 28535572
Alignment:
Q  383 acaaatcacaattcacagtcgtctttcttctcacaacaaacaaacaaacctctcattcttccactctcatcagtcagcagcatcattttctctcttaact 482  Q
    ||||||||||||||||| ||  |||||||||||||||||||||||| |||||||   ||||||||||||||||||||||||||||||||||||||| |||    
T  28535356 acaaatcacaattcacaatctcctttcttctcacaacaaacaaacagacctctc---cttccactctcatcagtcagcagcatcattttctctcttcact 28535452  T
Q  483 ccttcttcaaatctagtgtatctctcagttctcactctaagtctaagccaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaa 582  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28535453 ccttcttcaaatctagtgtatctctcaattctcactctaagtctaagccaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaa 28535552  T
Q  583 ttgcttttttggggttttag 602  Q
    |||||||||| |||||||||    
T  28535553 ttgcttttttagggttttag 28535572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 514 - 602
Target Start/End: Original strand, 45483709 - 45483797
Alignment:
Q  514 tcactctaagtctaagccaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttag 602  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  45483709 tcactctaagtctaagccaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttagggttttag 45483797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 1e-38
Query Start/End: Original strand, 408 - 502
Target Start/End: Complemental strand, 11463789 - 11463695
Alignment:
Q  408 tcttctcacaacaaacaaacaaacctctcattcttccactctcatcagtcagcagcatcattttctctcttaactccttcttcaaatctagtgta 502  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  11463789 tcttctcacaacaaacaaacaaacctctccttcttccactctcagcagtcagcagcatcattttctctcttcactccttcttcaaatctagtgta 11463695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 599 - 663
Target Start/End: Original strand, 45484062 - 45484126
Alignment:
Q  599 ttaggcctccaatttcaagctatcatcctgacatcaaagatgaggtacgtaaagcttacttgaaa 663  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  45484062 ttaggcctccaatttcaagctatcatcctgacatccaagatgaggtacgtaaagcttacttgaaa 45484126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 535 - 602
Target Start/End: Complemental strand, 11463697 - 11463630
Alignment:
Q  535 gtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttag 602  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||    
T  11463697 gtaagtgaaatagtcaattgattctctactttctcattcattctacaatttctattttagggttttag 11463630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 408 - 483
Target Start/End: Original strand, 45483642 - 45483714
Alignment:
Q  408 tcttctcacaacaaacaaacaaacctctcattcttccactctcatcagtcagcagcatcattttctctcttaactc 483  Q
    |||||| ||||||||||||||||||||||   |||||||||||||||||||||| ||| |||||||||||| ||||    
T  45483642 tcttcttacaacaaacaaacaaacctctc---cttccactctcatcagtcagcaacataattttctctcttcactc 45483714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 661 - 702
Target Start/End: Original strand, 45486353 - 45486394
Alignment:
Q  661 aaattttgccacactaatatgaaatgtctagatccgcccctg 702  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  45486353 aaattttgccacactaatatgcaatgtctagatccgcccctg 45486394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 665 - 702
Target Start/End: Complemental strand, 11462767 - 11462730
Alignment:
Q  665 tttgccacactaatatgaaatgtctagatccgcccctg 702  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  11462767 tttgccacactaatatgaaatgtctagattcgcccctg 11462730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 176; Significance: 3e-94; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 176; E-Value: 3e-94
Query Start/End: Original strand, 930 - 1145
Target Start/End: Original strand, 37130752 - 37130967
Alignment:
Q  930 cacattaggaaatgtgtttgtaattttaatacaatcaaaagattataacgacatcacgtgacatagtcttatctgctatgaatatatcttgtatatggct 1029  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | | | | |    
T  37130752 cacattaggagatgtgtttgtaattttaatacattcaaaagattataacgacatcacatgacatagtcttatctgctatgaatatatcttctctgtagtt 37130851  T
Q  1030 tttatattgaaaatgagaaaatctttcaatatttttgtcactacataatgtactctttatgcttatttccttatgtatccctctgttttcattctttagt 1129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  37130852 tttatattgaaaatgagaaaatctttcaatatttttgtcactacataatgcactctttatgcttatttccttatgtatccctctgttttcattctttagt 37130951  T
Q  1130 atacatattgatgatg 1145  Q
    |||||||||| |||||    
T  37130952 atacatattgttgatg 37130967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 158; E-Value: 2e-83
Query Start/End: Original strand, 383 - 602
Target Start/End: Original strand, 52118488 - 52118704
Alignment:
Q  383 acaaatcacaattcacagtcgtctttcttctcacaacaaacaaacaaacctctcattcttccactctcatcagtcagcagcatcattttctctcttaact 482  Q
    ||||||||||||||||| ||  ||||| ||||||||||||||||||||| ||||   ||||||||||| || |||||||||||||||||||||||| |||    
T  52118488 acaaatcacaattcacaatctcctttcctctcacaacaaacaaacaaacatctc---cttccactctcgtcggtcagcagcatcattttctctcttcact 52118584  T
Q  483 ccttcttcaaatctagtgtatctctcagttctcactctaagtctaagccaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaa 582  Q
    |||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52118585 ccttcttcaattctagtgtatctctcaattctcactctaagtttaagccaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaa 52118684  T
Q  583 ttgcttttttggggttttag 602  Q
    |||||||||| |||||||||    
T  52118685 ttgcttttttagggttttag 52118704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 109; E-Value: 3e-54
Query Start/End: Original strand, 383 - 529
Target Start/End: Original strand, 26555669 - 26555812
Alignment:
Q  383 acaaatcacaattcacagtcgtctttcttctcacaacaaacaaacaaacctctcattcttccactctcatcagtcagcagcatcattttctctcttaact 482  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||||   |||||||||||||||||||||| |||||||||||||||| |||    
T  26555669 acaaatcacaattcacaatcttctttcttctcacaacaaacaaacaaacctctc---cttccactctcatcagtcagcatcatcattttctctcttcact 26555765  T
Q  483 ccttcttcaaatctagtgtatctctcagttctcactctaagtctaag 529  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||    
T  26555766 ccttcttcaattctagtgtatctctcaattctcactctaagtctaag 26555812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 514 - 602
Target Start/End: Original strand, 25069586 - 25069674
Alignment:
Q  514 tcactctaagtctaagccaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttag 602  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  25069586 tcactctaagtctaagccaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttagggttttag 25069674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 514 - 602
Target Start/End: Complemental strand, 26905749 - 26905661
Alignment:
Q  514 tcactctaagtctaagccaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttag 602  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  26905749 tcactctaagtctaagccaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttagggttttag 26905661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 514 - 602
Target Start/End: Original strand, 36615291 - 36615379
Alignment:
Q  514 tcactctaagtctaagccaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttag 602  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  36615291 tcactctaagtctaagccaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttagggttttag 36615379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 81; E-Value: 2e-37
Query Start/End: Original strand, 514 - 602
Target Start/End: Complemental strand, 28211468 - 28211380
Alignment:
Q  514 tcactctaagtctaagccaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttag 602  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  28211468 tcactctaagtctaagccaaggtaagtgaaataatcaattgattctctactttctcattcattctacaattgcttttttagggttttag 28211380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 525 - 602
Target Start/End: Original strand, 26556955 - 26557032
Alignment:
Q  525 ctaagccaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttag 602  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||    
T  26556955 ctaagccaaggtaagtgaaatagtcaattaattctctactttctcattcattctacaattgcttttttaggattttag 26557032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 599 - 663
Target Start/End: Complemental strand, 26905396 - 26905332
Alignment:
Q  599 ttaggcctccaatttcaagctatcatcctgacatcaaagatgaggtacgtaaagcttacttgaaa 663  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  26905396 ttaggcctccaatttcaagctatcatcctgacatccaagatgaggtacgtaaagcttacttgaaa 26905332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 599 - 663
Target Start/End: Original strand, 36615644 - 36615708
Alignment:
Q  599 ttaggcctccaatttcaagctatcatcctgacatcaaagatgaggtacgtaaagcttacttgaaa 663  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  36615644 ttaggcctccaatttcaagctatcatcctgacatccaagatgaggtacgtaaagcttacttgaaa 36615708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 735 - 818
Target Start/End: Original strand, 37130547 - 37130630
Alignment:
Q  735 aagtgccccaccgtgtttttatatannnnnnncctataaatgtttgaggccaccatatagtaaatgtattaaatctattaaaat 818  Q
    |||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  37130547 aagtgccccaccgtgtttttatatatttttttcctataaatgtttgaggccaccatatagtaaatgtattaaatctactaaaat 37130630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 408 - 483
Target Start/End: Complemental strand, 26905816 - 26905744
Alignment:
Q  408 tcttctcacaacaaacaaacaaacctctcattcttccactctcatcagtcagcagcatcattttctctcttaactc 483  Q
    |||||| ||||||||||||||||||||||   |||||||||||||||||||||| ||| |||||||||||| ||||    
T  26905816 tcttcttacaacaaacaaacaaacctctc---cttccactctcatcagtcagcaacataattttctctcttcactc 26905744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 408 - 483
Target Start/End: Original strand, 36615224 - 36615296
Alignment:
Q  408 tcttctcacaacaaacaaacaaacctctcattcttccactctcatcagtcagcagcatcattttctctcttaactc 483  Q
    |||||| ||||||||||||||||||||||   |||||||||||||||||||||| ||| |||||||||||| ||||    
T  36615224 tcttcttacaacaaacaaacaaacctctc---cttccactctcatcagtcagcaacataattttctctcttcactc 36615296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 1029 - 1092
Target Start/End: Original strand, 37124375 - 37124438
Alignment:
Q  1029 ttttatattgaaaatgagaaaatctttcaatatttttgtcactacataatgtactctttatgct 1092  Q
    ||||||||||||| ||| |||||||||||||||||| ||| ||||||| |||||||||||||||    
T  37124375 ttttatattgaaattgaaaaaatctttcaatattttggtcgctacatagtgtactctttatgct 37124438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 408 - 483
Target Start/End: Original strand, 25069519 - 25069591
Alignment:
Q  408 tcttctcacaacaaacaaacaaacctctcattcttccactctcatcagtcagcagcatcattttctctcttaactc 483  Q
    |||||| ||||||||||||||||||||||   ||||||||||||||||||| || ||| |||||||||||| ||||    
T  25069519 tcttcttacaacaaacaaacaaacctctc---cttccactctcatcagtcaacaacataattttctctcttcactc 25069591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 661 - 704
Target Start/End: Original strand, 25070869 - 25070912
Alignment:
Q  661 aaattttgccacactaatatgaaatgtctagatccgcccctgat 704  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  25070869 aaattttgccacactaatatgcaatgtctagatccgcccctgat 25070912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 661 - 703
Target Start/End: Complemental strand, 26903105 - 26903063
Alignment:
Q  661 aaattttgccacactaatatgaaatgtctagatccgcccctga 703  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  26903105 aaattttgccacactaatatgcaatgtctagatccgcccctga 26903063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 661 - 703
Target Start/End: Original strand, 36617935 - 36617977
Alignment:
Q  661 aaattttgccacactaatatgaaatgtctagatccgcccctga 703  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  36617935 aaattttgccacactaatatgcaatgtctagatccgcccctga 36617977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 661 - 702
Target Start/End: Original strand, 26557644 - 26557685
Alignment:
Q  661 aaattttgccacactaatatgaaatgtctagatccgcccctg 702  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  26557644 aaattttgccacactaatatgacatgtctagatccgcccctg 26557685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 661 - 702
Target Start/End: Complemental strand, 28210921 - 28210880
Alignment:
Q  661 aaattttgccacactaatatgaaatgtctagatccgcccctg 702  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  28210921 aaattttgccacactaatatgcaatgtctagatccgcccctg 28210880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 408 - 483
Target Start/End: Complemental strand, 28211535 - 28211463
Alignment:
Q  408 tcttctcacaacaaacaaacaaacctctcattcttccactctcatcagtcagcagcatcattttctctcttaactc 483  Q
    |||||| ||||||||||||||||| ||||   ||||||||||||| |||||||| ||| |||||||||||| ||||    
T  28211535 tcttcttacaacaaacaaacaaacatctc---cttccactctcataagtcagcaacataattttctctcttcactc 28211463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 661 - 702
Target Start/End: Original strand, 52119126 - 52119167
Alignment:
Q  661 aaattttgccacactaatatgaaatgtctagatccgcccctg 702  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  52119126 aaattttgccacactaatatgacatgtctagatccgcccctg 52119167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 408 - 461
Target Start/End: Original strand, 2125523 - 2125573
Alignment:
Q  408 tcttctcacaacaaacaaacaaacctctcattcttccactctcatcagtcagca 461  Q
    |||||| ||||||||||||||||||||||   ||||||||||||||||||||||    
T  2125523 tcttcttacaacaaacaaacaaacctctc---cttccactctcatcagtcagca 2125573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 665 - 702
Target Start/End: Original strand, 2125769 - 2125806
Alignment:
Q  665 tttgccacactaatatgaaatgtctagatccgcccctg 702  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  2125769 tttgccacactaatatgcaatgtctagatccgcccctg 2125806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 169; Significance: 5e-90; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 169; E-Value: 5e-90
Query Start/End: Original strand, 383 - 602
Target Start/End: Original strand, 16693162 - 16693380
Alignment:
Q  383 acaaatcacaattcacagtcgtctttcttctcacaacaaacaaacaaacctctcattcttccactctcatcagtcagcagcatcattttctctcttaact 482  Q
    ||||||||||||||||| ||  ||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||| |||    
T  16693162 acaaatcacaattcacaatctcctttcttctcacaacaaacaaacaaacctctc---cttccactctcatcagtcagcagcatcattttctctcttcact 16693258  T
Q  483 ccttcttcaaatctagtgtatctctcagttctcactcta--agtctaagccaaggtaagtgaaatagtcaattgattctctactttctcattcattctac 580  Q
    ||||||||||||||||||||||||||| |||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16693259 ccttcttcaaatctagtgtatctctcaattctcactctataagtctaagtcaaggtaagtgaaatagtcaattgattctctactttctcattcattctac 16693358  T
Q  581 aattgcttttttggggttttag 602  Q
    |||||||||||| |||||||||    
T  16693359 aattgcttttttagggttttag 16693380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 538 - 704
Target Start/End: Complemental strand, 5013891 - 5013726
Alignment:
Q  538 agtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttaggcctccaatttcaagctatcatcctgacatcaaag 637  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||| |||    
T  5013891 agtgaaatagtcaattgattctttactttctcattcattctacaattgcttttttagggttttaggccttcaatttcaagctatcatcctg-catccaag 5013793  T
Q  638 atgaggtacgtaaagcttacttgaaattttgccacactaatatgaaatgtctagatccgcccctgat 704  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5013792 atgaggcatgtaaagcttacttgaaattttgccacactaatatgaaatgtctagatccgtccctgat 5013726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 383 - 500
Target Start/End: Complemental strand, 5014005 - 5013888
Alignment:
Q  383 acaaatcacaattcacagtcgtctttcttctcacaacaaacaaacaaacctctcattcttccactctcatcagtcagcagcatcattttctctcttaact 482  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||||| |||| |||    
T  5014005 acaaatcacaattcacaatcgtctttcttctcacaacaaacaaacaaacctcttcttcttccactctcatcagtcagcaacatcattttctatcttcact 5013906  T
Q  483 ccttcttcaaatctagtg 500  Q
    ||||||||||||||||||    
T  5013905 ccttcttcaaatctagtg 5013888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 514 - 602
Target Start/End: Complemental strand, 18819511 - 18819423
Alignment:
Q  514 tcactctaagtctaagccaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttag 602  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  18819511 tcactctaagtctaagccaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttagggttttag 18819423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 73; E-Value: 9e-33
Query Start/End: Original strand, 514 - 602
Target Start/End: Complemental strand, 24904417 - 24904329
Alignment:
Q  514 tcactctaagtctaagccaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttag 602  Q
    ||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  24904417 tcactctaagtctaagcgaaggtaagtgaaattttcaattgattctctactttctcattcattctacaattgcttttttagggttttag 24904329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 599 - 663
Target Start/End: Complemental strand, 18819158 - 18819094
Alignment:
Q  599 ttaggcctccaatttcaagctatcatcctgacatcaaagatgaggtacgtaaagcttacttgaaa 663  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  18819158 ttaggcctccaatttcaagctatcatcctgacatccaagatgaggtacgtaaagcttacttgaaa 18819094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 599 - 663
Target Start/End: Complemental strand, 24903926 - 24903862
Alignment:
Q  599 ttaggcctccaatttcaagctatcatcctgacatcaaagatgaggtacgtaaagcttacttgaaa 663  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  24903926 ttaggcctccaatttcaagctatcatcctgacatccaagatgaggtacgtaaagcttacttgaaa 24903862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 408 - 483
Target Start/End: Complemental strand, 18819578 - 18819506
Alignment:
Q  408 tcttctcacaacaaacaaacaaacctctcattcttccactctcatcagtcagcagcatcattttctctcttaactc 483  Q
    |||||| ||||||||||||||||||||||   |||||||||||||||||||||| ||| |||||||||||| ||||    
T  18819578 tcttcttacaacaaacaaacaaacctctc---cttccactctcatcagtcagcaacataattttctctcttcactc 18819506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 661 - 702
Target Start/End: Original strand, 16693607 - 16693648
Alignment:
Q  661 aaattttgccacactaatatgaaatgtctagatccgcccctg 702  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  16693607 aaattttgccacactaatatgaaatgtctagatccgcccctg 16693648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 408 - 483
Target Start/End: Complemental strand, 24904484 - 24904412
Alignment:
Q  408 tcttctcacaacaaacaaacaaacctctcattcttccactctcatcagtcagcagcatcattttctctcttaactc 483  Q
    |||||| ||||||||||||||||||||||   ||||||||||||||| |||||| ||| |||||||||||| ||||    
T  24904484 tcttcttacaacaaacaaacaaacctctc---cttccactctcatcaatcagcaacataattttctctcttcactc 24904412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 661 - 703
Target Start/End: Complemental strand, 18816867 - 18816825
Alignment:
Q  661 aaattttgccacactaatatgaaatgtctagatccgcccctga 703  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  18816867 aaattttgccacactaatatgcaatgtctagatccgcccctga 18816825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 242
Target Start/End: Complemental strand, 5014215 - 5014160
Alignment:
Q  187 gggcggatgtacattgaaacatgatgtggcagctgccacaccatattctagcctaa 242  Q
    ||||||||||| | ||||||||| ||||||||||||||||||| |||||| |||||    
T  5014215 gggcggatgtagagtgaaacatggtgtggcagctgccacaccagattctaacctaa 5014160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 661 - 703
Target Start/End: Original strand, 595770 - 595812
Alignment:
Q  661 aaattttgccacactaatatgaaatgtctagatccgcccctga 703  Q
    |||||||||||||||||||| |||||||||||||| |||||||    
T  595770 aaattttgccacactaatatcaaatgtctagatccacccctga 595812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 163; Significance: 2e-86; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 163; E-Value: 2e-86
Query Start/End: Original strand, 408 - 602
Target Start/End: Complemental strand, 45067632 - 45067438
Alignment:
Q  408 tcttctcacaacaaacaaacaaacctctcattcttccactctcatcagtcagcagcatcattttctctcttaactccttcttcaaatctagtgtatctct 507  Q
    |||||||||||||| |||||||||||||| |||||||||||||| ||||||||| |||||||||||||| | ||||||| ||||||||||||||||||||    
T  45067632 tcttctcacaacaagcaaacaaacctctccttcttccactctcagcagtcagcaacatcattttctctcgtcactcctttttcaaatctagtgtatctct 45067533  T
Q  508 cagttctcactctaagtctaagccaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttag 602  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  45067532 cagttctcactctaagtctaagccaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttagggttttag 45067438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 160; E-Value: 1e-84
Query Start/End: Original strand, 408 - 599
Target Start/End: Original strand, 8903451 - 8903642
Alignment:
Q  408 tcttctcacaacaaacaaacaaacctctcattcttccactctcatcagtcagcagcatcattttctctcttaactccttcttcaaatctagtgtatctct 507  Q
    ||||||||||||||| ||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  8903451 tcttctcacaacaaataaacaaatctctccttcttccactctcagcagtcagcagcatcattttctctcttcactccttcttcaaatctagtgtatctct 8903550  T
Q  508 cagttctcactctaagtctaagccaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttggggttt 599  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  8903551 cagttctcactctaagtgtaagccaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgctattttagggttt 8903642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 599 - 663
Target Start/End: Original strand, 8904153 - 8904217
Alignment:
Q  599 ttaggcctccaatttcaagctatcatcctgacatcaaagatgaggtacgtaaagcttacttgaaa 663  Q
    ||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||    
T  8904153 ttaggcctccaatttcatgctatcatcctgtcatctaagatgaggtacgtaaagcttacttgaaa 8904217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 599 - 663
Target Start/End: Complemental strand, 45066094 - 45066030
Alignment:
Q  599 ttaggcctccaatttcaagctatcatcctgacatcaaagatgaggtacgtaaagcttacttgaaa 663  Q
    |||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||    
T  45066094 ttaggcctccaatttcaagctatcttcctgaaatccaagatgaggtacgtaaagcttacttgaaa 45066030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 661 - 695
Target Start/End: Complemental strand, 45065922 - 45065888
Alignment:
Q  661 aaattttgccacactaatatgaaatgtctagatcc 695  Q
    |||||||||||||||||||||||||||||||||||    
T  45065922 aaattttgccacactaatatgaaatgtctagatcc 45065888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 665 - 698
Target Start/End: Original strand, 8904430 - 8904463
Alignment:
Q  665 tttgccacactaatatgaaatgtctagatccgcc 698  Q
    ||||||||||||||||||||||||||||||||||    
T  8904430 tttgccacactaatatgaaatgtctagatccgcc 8904463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 8903210 - 8903262
Alignment:
Q  187 gggcggatgtacattgaaacatgatgtggcagctgccacaccatattctagcc 239  Q
    |||||||||||||||| | |||| |||||||||| |||||||| |||||||||    
T  8903210 gggcggatgtacattgtagcatggtgtggcagctaccacaccagattctagcc 8903262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 143; Significance: 2e-74; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 143; E-Value: 2e-74
Query Start/End: Original strand, 424 - 602
Target Start/End: Complemental strand, 18113642 - 18113464
Alignment:
Q  424 aaacaaacctctcattcttccactctcatcagtcagcagcatcattttctctcttaactccttcttcaaatctagtgtatctctcagttctcactctaag 523  Q
    ||||||||||||| ||||||| |||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  18113642 aaacaaacctctccttcttcccctctcagcagtcagcaacatcattttctctcttcactccttcttcaaatctagtgtatctctcagttctcactctaag 18113543  T
Q  524 tctaagccaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttag 602  Q
    |||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  18113542 tctaagtcaaggtaagtgaaatattcaattgattctctactttttcattcattctacaattgcttttttagggttttag 18113464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 424 - 600
Target Start/End: Complemental strand, 424647 - 424471
Alignment:
Q  424 aaacaaacctctcattcttccactctcatcagtcagcagcatcattttctctcttaactccttcttcaaatctagtgtatctctcagttctcactctaag 523  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  424647 aaacaaacctctccttcttccactctcagcagtcagcagcatcattttctctcttcactccttcttcaaatctagtgtatctctcagttctcactctaag 424548  T
Q  524 tctaagccaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttggggtttt 600  Q
    |||||||||| |||| ||||||| | |||||||||||||| ||||| |||||||||| ||||||||||| |||||||    
T  424547 tctaagccaatgtaaatgaaatattaaattgattctctaccttctcgttcattctacgattgcttttttagggtttt 424471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 514 - 602
Target Start/End: Complemental strand, 25634229 - 25634141
Alignment:
Q  514 tcactctaagtctaagccaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttag 602  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  25634229 tcactctaagtctaagccaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttagggttttag 25634141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 517 - 602
Target Start/End: Original strand, 17074882 - 17074967
Alignment:
Q  517 ctctaagtctaagccaaggtaagtgaaatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttag 602  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  17074882 ctctaagtctaagccaaggtaagtgagatagtcaattgattctctactttctcattcattctacaattgcttttttagggttttag 17074967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 183 - 242
Target Start/End: Complemental strand, 424882 - 424823
Alignment:
Q  183 acatgggcggatgtacattgaaacatgatgtggcagctgccacaccatattctagcctaa 242  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  424882 acatgggcggatgtacattgaaacatggtgtggcagctgccacaccagattctagcctaa 424823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 600 - 659
Target Start/End: Original strand, 17075326 - 17075385
Alignment:
Q  600 taggcctccaatttcaagctatcatcctgacatcaaagatgaggtacgtaaagcttactt 659  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||    
T  17075326 taggcctccaatttcaagctatcaacctgacatccaagatgaggtatgtaaagcttactt 17075385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 184 - 240
Target Start/End: Complemental strand, 18113883 - 18113827
Alignment:
Q  184 catgggcggatgtacattgaaacatgatgtggcagctgccacaccatattctagcct 240  Q
    |||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||    
T  18113883 catgggcggatgtacattgaaacatggtgtggcagttgccacaccagattctagcct 18113827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 408 - 477
Target Start/End: Original strand, 17074816 - 17074885
Alignment:
Q  408 tcttctcacaacaaacaaacaaacctctcattcttccactctcatcagtcagcagcatcattttctctct 477  Q
    |||||||||||||| |||||| ||||||| ||||||||||| || |||||| || |||||||||||||||    
T  17074816 tcttctcacaacaaccaaacatacctctccttcttccactcccagcagtcaacaacatcattttctctct 17074885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 408 - 483
Target Start/End: Complemental strand, 25634296 - 25634224
Alignment:
Q  408 tcttctcacaacaaacaaacaaacctctcattcttccactctcatcagtcagcagcatcattttctctcttaactc 483  Q
    |||||| |||||||||||||||||||||| |||   |||||||||||||||||| ||| |||||||||||| ||||    
T  25634296 tcttcttacaacaaacaaacaaacctctctttc---cactctcatcagtcagcaacataattttctctcttcactc 25634224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 665 - 702
Target Start/End: Complemental strand, 9047525 - 9047488
Alignment:
Q  665 tttgccacactaatatgaaatgtctagatccgcccctg 702  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9047525 tttgccacactaatatgaaatgtctagatccgcccctg 9047488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 665 - 701
Target Start/End: Complemental strand, 424023 - 423987
Alignment:
Q  665 tttgccacactaatatgaaatgtctagatccgcccct 701  Q
    |||||||||||||||||||||||||||||||||||||    
T  424023 tttgccacactaatatgaaatgtctagatccgcccct 423987  T

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Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 665 - 703
Target Start/End: Complemental strand, 18108399 - 18108361
Alignment:
Q  665 tttgccacactaatatgaaatgtctagatccgcccctga 703  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  18108399 tttgccacactaatataaaatgtctagatccgcccctga 18108361  T

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Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 664 - 701
Target Start/End: Original strand, 17077002 - 17077039
Alignment:
Q  664 ttttgccacactaatatgaaatgtctagatccgcccct 701  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  17077002 ttttgtcacactaatatgaaatgtctagatccgcccct 17077039  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 663 - 704
Target Start/End: Complemental strand, 13475593 - 13475552
Alignment:
Q  663 attttgccacactaatatgaaatgtctagatccgcccctgat 704  Q
    |||||||||||| ||||| |||||||| ||||||||||||||    
T  13475593 attttgccacaccaatatcaaatgtctggatccgcccctgat 13475552  T

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Target: scaffold0571 (Bit Score: 137; Significance: 6e-71; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 137; E-Value: 6e-71
Query Start/End: Original strand, 542 - 702
Target Start/End: Original strand, 1 - 161
Alignment:
Q  542 aaatagtcaattgattctctactttctcattcattctacaattgcttttttggggttttaggcctccaatttcaagctatcatcctgacatcaaagatga 641  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| || ||||    
T  1 aaatagtcaattgattctctactttctcattcattctacaattgcttttttaggattttaggcctccaatttcaagctatcatcctgacatccaaaatga 100  T
Q  642 ggtacgtaaagcttacttgaaattttgccacactaatatgaaatgtctagatccgcccctg 702  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  101 ggtacgcaaagcttacttgaaattttgccacactaatatgaaatgtctagatccacccctg 161  T

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