View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4402_low_10 (Length: 572)
Name: NF4402_low_10
Description: NF4402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4402_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 15 - 556
Target Start/End: Original strand, 8880612 - 8881152
Alignment:
| Q |
15 |
tcaatgttatagagttgacattcatgataagattaagataaagtgtggacggtagcaactgatttatctaacatagtacatttggataactatgtattag |
114 |
Q |
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| T |
8880612 |
tcaatgttatagagttgacattcatgataagattaagataaattgtggacggtagcaactgatttatctaacatagtacatttggataactatgtattag |
8880711 |
T |
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| Q |
115 |
ttattttaagttataaccacgtatctatatgaaatactatagaaaatggaacattaatagctagcctcaaaagccaaagacattatccatttttatgaac |
214 |
Q |
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| T |
8880712 |
ttattataagttataaccacgtatctatatgaaatactatagaaaatggcacattaatagctggcctcaaaagccaaagacattatccatttttatgaac |
8880811 |
T |
|
| Q |
215 |
attaattggcaagactcacaatcaagatctttcacaaaatcttcaactcaattttagctcaaattgtgtagaggcttaataaagacgagcatgtgcaaga |
314 |
Q |
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| T |
8880812 |
attaattggcaagactcacaatcaagatctttcacaaaatcttcaactcaattttagctcaaattgtgaagaggcttaataaagacgagcatgtgcaaga |
8880911 |
T |
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| Q |
315 |
tatcttgaatccaatgcgtgtgatga-ttttttcttggattgttgttaacccattcacgcggtccagtgttccacaagctactattctgtcgtataaggc |
413 |
Q |
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| T |
8880912 |
tatcttgaatccaatgtgtgtgatgatttttttcttggattgttgttaacccattcgcgcggtccagtgttccacaagctactattctgtcgtataaggc |
8881011 |
T |
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| Q |
414 |
gttttttagttccatgcatttcatttttccattggttttacttagatttgcctaatttagtgtgaagtgttgttttctttttcagcataattagggnnnn |
513 |
Q |
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| T |
8881012 |
gttttttagttccatgcattacatttttccattggttttacttagatttgcctaatttagtgtgaagtgttgttttctttttcagcataattaggg--tt |
8881109 |
T |
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| Q |
514 |
nnngactctgatagactaaacgtcccaaactcaaagtatcttc |
556 |
Q |
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| T |
8881110 |
tttgactttgatagactaaacgtcccaaactcaaagtatcttc |
8881152 |
T |
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