View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4402_low_11 (Length: 572)
Name: NF4402_low_11
Description: NF4402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4402_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 537; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 1 - 557
Target Start/End: Original strand, 33926217 - 33926773
Alignment:
| Q |
1 |
tttcacatttcatcctcaacgaagctccaactatctggaacttcatcctctcttgcttcactccaccttacctttatctccctctcaacctcatcatcct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33926217 |
tttcacatttcatcctcaacgaagctccaactatctggaacttcatcctctcttgcttcactccaccttacctttatctccttctcaacctcatcatcct |
33926316 |
T |
|
| Q |
101 |
caccatcgtcatcacctccaaattccacaatcatcaccaccattctccgccggagacacctttcgacggaataccttctcctgttcctgttcctgttcag |
200 |
Q |
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|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33926317 |
caccatcgtcatcacttccaaattccacaatcatcaccaccattctccgccggagacacctttcgacggaataccttctcctgttcctgttcctgttcag |
33926416 |
T |
|
| Q |
201 |
atccctgtgccggagacacttcagatctctgaaaccgctactctaacgaactacaacggcttcgtttctaaagcttctgaaggttaccgttatgaactga |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
33926417 |
atccctgtgccggagacacttcagatctctgaaaccgctactctaacgaactacaacggcttcgtttctgaagcttctgaaggttaccgttatgaactga |
33926516 |
T |
|
| Q |
301 |
aaaccgatgaaacagttgcggtaagtaacgaatctaacgattctgttgcttacgtcgccgatgagattactccggtgaaaacaacggttgttggagttga |
400 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33926517 |
aaaccgatgaaacagttgcagtaagtaacgaatctaacgattctgttgcttacgtcgccgatgagattactccggtgaaaacaacggttgttggagttga |
33926616 |
T |
|
| Q |
401 |
ggactccgttcatgtttccaatttgcagaagaaagtaccgttgcagttcgcatttaacgatgagaatgagaaacctccgatttcagctaggtctagtcac |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33926617 |
ggactccgttcatgtttccaatttgcagaagaaagtaccgttgcagttcgcatttaacgatgagaatgagaaacctccgatttcagctaggtctagtcac |
33926716 |
T |
|
| Q |
501 |
cggaaaactgttagatcaagtccagaaggtactgtcaccgtctctctctggttttgt |
557 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33926717 |
cggaaaaccgttagatcaagtccagaaggtactgtcaccgtctctctctggttttgt |
33926773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 429 - 558
Target Start/End: Original strand, 22463767 - 22463897
Alignment:
| Q |
429 |
aagaaagtaccgttgcagttcgcattt-aacgatgagaatgagaaacctccgatttcagctaggtctagtcaccggaaaactgttagatcaagtccagaa |
527 |
Q |
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||||||| ||||||||||||| | ||| |||||||| ||||||||||||| ||||||||||| |||||||||| ||||||||||| |||||||||||||| |
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| T |
22463767 |
aagaaagcaccgttgcagttcacgttttaacgatgacaatgagaaacctcagatttcagctaagtctagtcactggaaaactgttcgatcaagtccagaa |
22463866 |
T |
|
| Q |
528 |
ggtactgtcaccgtctctctctggttttgtt |
558 |
Q |
| |
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||||||||||||| ||||||||||||||||| |
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|
| T |
22463867 |
ggtactgtcaccgcctctctctggttttgtt |
22463897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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