View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4402_low_12 (Length: 551)
Name: NF4402_low_12
Description: NF4402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4402_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-135; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 63 - 339
Target Start/End: Complemental strand, 48320650 - 48320374
Alignment:
| Q |
63 |
tgaatccaagtattgaagatgaagatctcatgtttgactgcttcgaaaattcccttgacccaagtttcttcaatatgagtaacccaacactagcatattt |
162 |
Q |
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| T |
48320650 |
tgaatccaagtatggaagatgaagatctcatgtttgactgtttcgaaaattcccttgacccaagtttcttcaatatgagtaacccaacactagcagattt |
48320551 |
T |
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| Q |
163 |
atccattgataacaataacaacaatgtgggtcccacttcattgtcccaacaaactcagcatatcaatttatccattaataaaaataatggaccccaccaa |
262 |
Q |
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| T |
48320550 |
atccattgataacaataacaacaatgtgggtcccacttcattgtcccaacaaactcagcatatcaatttatccattaataaaaataatggaccccaccaa |
48320451 |
T |
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| Q |
263 |
aatcttcgtggagttggaatagttagtaactttaatgatcttttttccaccccaccatcccaagaaaattactatgg |
339 |
Q |
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| T |
48320450 |
aatcttcaaggagttggaatagttagtaactttaatgatgttttttccagtccaccatcccaagaaaattactatgg |
48320374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 358 - 534
Target Start/End: Complemental strand, 48320301 - 48320125
Alignment:
| Q |
358 |
taataatgatccatttgcttacaatttagaatcaccagaaaatgatcatcatagtcaacaagtgcatggtggttgtgatgatccttatatgtacaattta |
457 |
Q |
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| T |
48320301 |
taataatgatccatttgcttacaatttagaatcaccagaaaatgatcatcatattcaacaagtgcatggtggttgtaatgatccttatatgtacaattta |
48320202 |
T |
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| Q |
458 |
gtaacaccagaaaatcaccatgaatatattcaacaagggcagggtggtaatactgattcattttcggatgttatgtt |
534 |
Q |
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| T |
48320201 |
gtaccaccagaaaatcaccatgaatatattcaacaagggcagggtggtaatactgattcattttcggatgttatgtt |
48320125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 48320720 - 48320679
Alignment:
| Q |
11 |
catcatcaccatcccataattttgtttcaaccaacgtaaatt |
52 |
Q |
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| T |
48320720 |
catcatcaccattccataattttgtttcaaccaacgtaaatt |
48320679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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