View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4402_low_14 (Length: 547)

Name: NF4402_low_14
Description: NF4402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4402_low_14
NF4402_low_14
[»] chr5 (18 HSPs)
chr5 (9-531)||(8643191-8643714)
chr5 (47-514)||(8635802-8636280)
chr5 (47-195)||(8677197-8677344)
chr5 (323-447)||(8527857-8527982)
chr5 (324-447)||(8640449-8640573)
chr5 (375-514)||(8677342-8677482)
chr5 (304-396)||(9002262-9002354)
chr5 (314-413)||(9075307-9075406)
chr5 (301-394)||(8420392-8420485)
chr5 (150-208)||(8545351-8545409)
chr5 (330-447)||(8534438-8534558)
chr5 (140-234)||(8640227-8640317)
chr5 (320-396)||(8549071-8549148)
chr5 (160-197)||(8549193-8549230)
chr5 (139-194)||(8527663-8527719)
chr5 (150-194)||(9075532-9075576)
chr5 (139-185)||(1601347-1601392)
chr5 (317-349)||(27458082-27458114)
[»] chr4 (1 HSPs)
chr4 (323-447)||(9442024-9442149)
[»] chr7 (2 HSPs)
chr7 (221-396)||(48362758-48362933)
chr7 (219-396)||(35777264-35777444)
[»] chr8 (2 HSPs)
chr8 (64-220)||(44438654-44438811)
chr8 (310-376)||(44438492-44438558)
[»] chr1 (2 HSPs)
chr1 (356-447)||(5129819-5129911)
chr1 (329-382)||(26324948-26325001)


Alignment Details
Target: chr5 (Bit Score: 472; Significance: 0; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 9 - 531
Target Start/End: Original strand, 8643191 - 8643714
Alignment:
Q  9 gagatgaagtaaaagagatataggtgattaggaacttaaatgaaatagtttagcaataatcattgtctttttctaaaccattgccaacaagataacaagt 108  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8643191 gagatgaagtaaaagagatatcggtgattaggaactaaaatgaaatagtttagcaataatcattgtctttttctaaaccattgccaacaagataacaagt 8643290  T
Q  109 caatatagtaaaaccatagatgataactactgaacatcttaattaaagtttacaaaaaagacatcatttgcatcctaaaatgagatatgcatttcttttc 208  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8643291 caatatagtaaaaccatagatgataattactgaacatctgaattaaagtttacaaaaaagacatcatttgcatcctaaaatgagatatgcattttttttc 8643390  T
Q  209 taaatatgataattgtgatttagcataacccttccttttgtatgaaaaatccttctttttagttatactc-ttcgtcaaaagcctctcacagaaggagga 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||    
T  8643391 taaatatgataattgtgatttagcataacccttccttttgtatgaaaaatccttctttttagttgtactctttcatcaaaagcctctcacagaaggagga 8643490  T
Q  308 gggtacttgtcaagtcatcattcaagatcttcattttcttcatataatttaaaatttgcacacctatataaaataacaccaatattacaaaaaagagcct 407  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8643491 gggtacttgtcaagtcatcattcaagatcttcatttttttcatataatttaaaatttgcacacctatataaaataacaccaatattacaaaaaagagcct 8643590  T
Q  408 aagtaagtgcctaaaattgtagtatgcaagggtcagaatatcctcatcaatgtgaaaagagacgtacttttcataatatacaggctcatcatcgaattct 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8643591 aagtaagtgcctaaaattgtagtatgcaagggtcagaatatcctcatcaatgtgaaaagagacgtacttttcataatatacaggctcatcatcgaattct 8643690  T
Q  508 tccccattagactgaggaaaatat 531  Q
    || |||| || |||||||||||||    
T  8643691 tcaccatcaggctgaggaaaatat 8643714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 47 - 514
Target Start/End: Original strand, 8635802 - 8636280
Alignment:
Q  47 aatgaaatagtttagcaataatcattgtctttttctaaaccattgccaacaagataacaagtcaatatagtaaaaccatagatgataactactgaacatc 146  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  8635802 aatgaaatagttgagcaacaatcattgtctttttctaaaccattgccaacaagataacaagtcaatctagtaaaaccatagatgataactactgaacatc 8635901  T
Q  147 ttaattaaagtttac-aaaaaagacatcatttgcatcctaaaatgagatatgcatttcttttct---aaatatgataattgtgatttagcataacccttc 242  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||   |||||| |||||||||||||||||||| |||||    
T  8635902 ttaattaaagtttacaaaaaaagacatcatttgcatcctaaaatgagatatgcattttttttctttcaaatatcataattgtgatttagcataaaccttc 8636001  T
Q  243 cttttgtatgaaaaatccttctttttagttata-----ctcttcgtcaaaagcc-tctcacagaaggaggagggtacttgtcaagtcatcattcaagatc 336  Q
    ||  |||||||||| ||||| ||||||||| ||     |||||| ||||||||| | ||   |||||||||| | ||||| ||| || ||||||||||||    
T  8636002 ctgctgtatgaaaattccttgtttttagttgtactcttctcttcatcaaaagccttgtcctcgaaggaggagagcacttgccaaatcgtcattcaagatc 8636101  T
Q  337 ttcattttcttcatataatttaaaatttgcacacctatataaaataacaccaatattacaaaaaagagcctaagtaa-gtgcctaaaattgtagtatgca 435  Q
    |||||||||||||  |||||||||||||||| |||||||||||||||| ||||||||||  || ||||||| ||||| || |||||||||||| || |||    
T  8636102 ttcattttcttcacttaatttaaaatttgcatacctatataaaataacgccaatattacgtaacagagccttagtaatgtacctaaaattgtattaagca 8636201  T
Q  436 agggtcagaatatcctcatcaatgtgaaaagagacgtacttttcataatatacaggctcatcatcgaattcttccccat 514  Q
    ||||| | | ||||| |||||||||||||||||||| |||| || ||| |||  ||||||||  |||||||||| ||||    
T  8636202 agggttacagtatccccatcaatgtgaaaagagacgcacttctcttaagatatgggctcatcgccgaattcttcaccat 8636280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 47 - 195
Target Start/End: Original strand, 8677197 - 8677344
Alignment:
Q  47 aatgaaatagtttagcaataatcattgtctttttctaaaccattgccaacaagataacaagtcaatatagtaaaaccatagatgataactactgaacatc 146  Q
    |||||||||||| |||||||||||||||||||||| |||| || ||||||||||||||||||||||  | |  |||||||||||||||||||||||| ||    
T  8677197 aatgaaatagttgagcaataatcattgtctttttccaaacaat-gccaacaagataacaagtcaatccaatgcaaccatagatgataactactgaacgtc 8677295  T
Q  147 ttaattaaagtttacaaaaaagacatcatttgcatcctaaaatgagata 195  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  8677296 ttaattaaagtttacaaaaaagacatcatttgcatccgaaaatgagata 8677344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 323 - 447
Target Start/End: Original strand, 8527857 - 8527982
Alignment:
Q  323 catcattcaagatcttcattttcttcatataatttaaaatttgcacacctatataaaataacaccaatattacaaaaaagagcctaagtaa-gtgcctaa 421  Q
    ||||||||||||||||||| ||||||||  ||||||| |||||||||||||||||||||||||||||||||||| || | || ||||||||  | |||||    
T  8527857 catcattcaagatcttcatcttcttcatgcaatttaatatttgcacacctatataaaataacaccaatattacataacaaagtctaagtaacatacctaa 8527956  T
Q  422 aattgtagtatgcaagggtcagaata 447  Q
    ||||||| || ||| |||||||||||    
T  8527957 aattgtaataagcaggggtcagaata 8527982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 324 - 447
Target Start/End: Original strand, 8640449 - 8640573
Alignment:
Q  324 atcattcaagatcttcattttcttcatataatttaaaatttgcacacctatataaaataacaccaatattacaaaaaagagcctaagtaa-gtgcctaaa 422  Q
    ||||||||||||||||||||||||||   |||||||| |||||||||||||||||||||||||||||  ||| ||| | || |||||||| |||||||||    
T  8640449 atcattcaagatcttcattttcttcacgcaatttaaattttgcacacctatataaaataacaccaatggtacgaaacaaagtctaagtaacgtgcctaaa 8640548  T
Q  423 attgtagtatgcaagggtcagaata 447  Q
    ||||||||| ||| |||||| ||||    
T  8640549 attgtagtaagcaggggtcaaaata 8640573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 375 - 514
Target Start/End: Original strand, 8677342 - 8677482
Alignment:
Q  375 ataaaataacaccaatattacaaaaaagagcctaagtaag-tgcctaaaattgtagtatgcaagggtcagaatatcctcatcaatgtgaaaagagacgta 473  Q
    ||||||||||||||||||||||||| |||||| ||||||  | ||||||||||||||| | | || ||||||||| | |||||| |||||||||||||||    
T  8677342 ataaaataacaccaatattacaaaacagagcccaagtaacattcctaaaattgtagtaaggacggatcagaatattcccatcaaagtgaaaagagacgta 8677441  T
Q  474 cttttcataatatacaggctcatcatcgaattcttccccat 514  Q
    |||||| | |||||  ||||| ||| | |||||||| ||||    
T  8677442 cttttcttcatatatgggctcgtcaccaaattcttcaccat 8677482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 304 - 396
Target Start/End: Original strand, 9002262 - 9002354
Alignment:
Q  304 aggagggtacttgtcaagtcatcattcaagatcttcattttcttcatataatttaaaatttgcacacctatataaaataacaccaatattaca 396  Q
    ||||||||| | |||||||| |||||||||||||||||||||||||   |||||||| |||||||||||||| |||| |||||||||||||||    
T  9002262 aggagggtaatagtcaagtcgtcattcaagatcttcattttcttcacgcaatttaaactttgcacacctatacaaaacaacaccaatattaca 9002354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 314 - 413
Target Start/End: Complemental strand, 9075406 - 9075307
Alignment:
Q  314 ttgtcaagtcatcattcaagatcttcattttcttcatataatttaaaatttgcacacctatataaaataacaccaatattacaaaaaagagcctaagtaa 413  Q
    |||| ||| |||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||| || ||||||| || | || ||||||||    
T  9075406 ttgttaagacatcattcaagatcttcattctcttcatgcaatttaaaatttgcacacctatataaaataacaacagtattacacaacaaagtctaagtaa 9075307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 301 - 394
Target Start/End: Original strand, 8420392 - 8420485
Alignment:
Q  301 aggaggagggtacttgtcaagtcatcattcaagatcttcattttcttcatataatttaaaatttgcacacctatataaaataacaccaatatta 394  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||||  |  |||  || |||||| |||||||||||||||||||| |||||    
T  8420392 aggaggaggatacttgtcaagtcatcattcaagatctttattttcttcgcacgattctaactttgcaaacctatataaaataacaccagtatta 8420485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 8545409 - 8545351
Alignment:
Q  150 attaaagtttacaaaaaagacatcatttgcatcctaaaatgagatatgcatttcttttc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||    
T  8545409 attaaagtttacaaaaaagacatcatttgcatcctaaaatgagatttgtattttttttc 8545351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 330 - 447
Target Start/End: Original strand, 8534438 - 8534558
Alignment:
Q  330 caagatcttcattttcttcatataatttaaaa--tttgcacacctatataaaataacaccaatattacaaaaaagagcctaagtaa-gtgcctaaaattg 426  Q
    |||||||||||||||||||||  || ||||||  |||| ||||||||||||||||||||||||||||||  |   || ||||||||  | ||||||||||    
T  8534438 caagatcttcattttcttcatgcaaattaaaaaatttgaacacctatataaaataacaccaatattacatgacgaagtctaagtaacatacctaaaattg 8534537  T
Q  427 tagtatgcaagggtcagaata 447  Q
    || || |||||||||||||||    
T  8534538 taataagcaagggtcagaata 8534558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 140 - 234
Target Start/End: Original strand, 8640227 - 8640317
Alignment:
Q  140 gaacatcttaattaaagtttacaaaaaagacatcatttgcatcctaaaatgagatatgcatttcttttctaaatatgataattgtgatttagcat 234  Q
    |||||||| |||||||| ||||||||| |||||  ||||||||||||||||||||||||||   ||||  |||||| |||||| |||||||||||    
T  8640227 gaacatctgaattaaagcttacaaaaa-gacattgtttgcatcctaaaatgagatatgcat---tttttgaaatatcataattctgatttagcat 8640317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 320 - 396
Target Start/End: Complemental strand, 8549148 - 8549071
Alignment:
Q  320 agtcatcattcaagatcttcattttcttcatataatttaaaa-tttgcacacctatataaaataacaccaatattaca 396  Q
    |||||||||||||||||||  ||||||| ||  ||||| ||| ||||||| |||||| ||||||||||||||||||||    
T  8549148 agtcatcattcaagatctttgttttctttatgcaattttaaactttgcacgcctatacaaaataacaccaatattaca 8549071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 160 - 197
Target Start/End: Complemental strand, 8549230 - 8549193
Alignment:
Q  160 acaaaaaagacatcatttgcatcctaaaatgagatatg 197  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  8549230 acaaaaaagacatcatttgcatcctaaaaagagatatg 8549193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 194
Target Start/End: Original strand, 8527663 - 8527719
Alignment:
Q  139 tgaacatcttaattaaagtttacaaaa-aagacatcatttgcatcctaaaatgagat 194  Q
    |||||||||  |||||| ||||||||| ||||||||||||||||| |||||||||||    
T  8527663 tgaacatctagattaaattttacaaaaaaagacatcatttgcatcttaaaatgagat 8527719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 9075576 - 9075532
Alignment:
Q  150 attaaagtttacaaaaaagacatcatttgcatcctaaaatgagat 194  Q
    ||||||||| ||||||||| ||||||||||||||||||| |||||    
T  9075576 attaaagttaacaaaaaagccatcatttgcatcctaaaacgagat 9075532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 1601392 - 1601347
Alignment:
Q  139 tgaacatcttaattaaagtttacaaaaaagacatcatttgcatccta 185  Q
    |||||||||  ||||||||||||||||| ||||||||||||||||||    
T  1601392 tgaacatctagattaaagtttacaaaaa-gacatcatttgcatccta 1601347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 349
Target Start/End: Complemental strand, 27458114 - 27458082
Alignment:
Q  317 tcaagtcatcattcaagatcttcattttcttca 349  Q
    ||||||| |||||||||||||||||||||||||    
T  27458114 tcaagtcgtcattcaagatcttcattttcttca 27458082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 323 - 447
Target Start/End: Original strand, 9442024 - 9442149
Alignment:
Q  323 catcattcaagatcttcattttcttcatataatttaaaatttgcacacctatataaaataacaccaatattacaaaaaagagcctaagtaa-gtgcctaa 421  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| || | || ||||||||  | |||||    
T  9442024 catcattcaagatcttcattttcttcatgtaatttaatatttgcacacctatataaaataacaccaatattacataacaaagtctaagtaacatacctaa 9442123  T
Q  422 aattgtagtatgcaagggtcagaata 447  Q
    ||||||| || |||||||||||||||    
T  9442124 aattgtaataagcaagggtcagaata 9442149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 221 - 396
Target Start/End: Complemental strand, 48362933 - 48362758
Alignment:
Q  221 ttgtgatttagcataacccttccttttgtatgaaaaatccttctttttagttatactcttcgtcaaaagcctctc-acagaaggaggagggtacttgtca 319  Q
    |||||||||| ||||||||| ||   |||||| ||| ||| |||| | |||| ||||||||  |||| ||||| | || | |||| || |||| ||||||    
T  48362933 ttgtgatttaacataaccctgcccagtgtatggaaattccctcttatcagttgtactcttcaccaaaggcctcaccaccggaggaagaaggtatttgtca 48362834  T
Q  320 agtcatcattcaagatcttcattttcttcatataatttaaaatttgcacacctatataaaataacaccaatattaca 396  Q
    |  |||||||| ||||||||||||||||||| |||||||| |||||||||||||||| ||||||||| |||||||||    
T  48362833 aaccatcattcgagatcttcattttcttcatgtaatttaatatttgcacacctatat-aaataacacgaatattaca 48362758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 219 - 396
Target Start/End: Original strand, 35777264 - 35777444
Alignment:
Q  219 aattgtgatttagcataacccttccttttgtatgaaaaatccttctttttagttatactcttcgtcaaaagcctctc-acagaaggag-gagggtacttg 316  Q
    ||||||||||||||||| || | |||  |||||| ||| | |||| |  ||||| ||||||||| ||||||| || | || ||||||| |||| ||||||    
T  35777264 aattgtgatttagcatagccatgcctactgtatggaaattacttcataatagttgtactcttcgccaaaagcgtcaccaccgaaggagagaggatacttg 35777363  T
Q  317 tcaagtcatcattcaagatcttcattttcttcatataatttaaaa-tttgcacacctatataaaataacaccaatattaca 396  Q
    ||||||||||||||||||||||||||| |||  |  | ||||||| |||||||  ||||| ||||||||||||||||||||    
T  35777364 tcaagtcatcattcaagatcttcatttacttactgcagtttaaaactttgcacgactatacaaaataacaccaatattaca 35777444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 64 - 220
Target Start/End: Complemental strand, 44438811 - 44438654
Alignment:
Q  64 ataatcattgtctttttctaaaccattgccaacaagataac-aagtcaatatagtaaaaccatagatgataactactgaacatcttaattaaa-gtttac 161  Q
    |||||||||| |||||||||||||| | ||| ||||||||| ||| || | | |||||||||| ||| || ||   ||||||| || |||||| |||||     
T  44438811 ataatcattgactttttctaaaccaat-ccatcaagataaccaagccagtctcgtaaaaccatggataatgaccgatgaacattttgattaaaagtttag 44438713  T
Q  162 aaaaaagacatcatttgcatcctaaaatgagatatgcatttcttttctaaatatgataa 220  Q
    |||||||||||||||||| |||||||||||||| || |||| |||| ||||||| ||||    
T  44438712 aaaaaagacatcatttgcctcctaaaatgagatgtgtattttttttttaaatatcataa 44438654  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 310 - 376
Target Start/End: Complemental strand, 44438558 - 44438492
Alignment:
Q  310 gtacttgtcaagtcatcattcaagatcttcattttcttcatataatttaaaatttgcacacctatat 376  Q
    |||||||||||||||||||| | |||||||| ||| |||    ||||||||||||||| ||||||||    
T  44438558 gtacttgtcaagtcatcatttacgatcttcacttttttctcgcaatttaaaatttgcagacctatat 44438492  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 356 - 447
Target Start/End: Original strand, 5129819 - 5129911
Alignment:
Q  356 ttaaaatttgcacacctatataaaataacaccaatattacaaaaaagagcctaagtaa-gtgcctaaaattgtagtatgcaagggtcagaata 447  Q
    |||||||||||||||||||||||||||| |||||||||||  || |  |||||| ||| ||||||||||||||| || ||| | |||||||||    
T  5129819 ttaaaatttgcacacctatataaaataagaccaatattacgtaacaaggcctaaataatgtgcctaaaattgtactaagcaggagtcagaata 5129911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 329 - 382
Target Start/End: Complemental strand, 26325001 - 26324948
Alignment:
Q  329 tcaagatcttcattttcttcatataatttaaaatttgcacacctatataaaata 382  Q
    ||||||||||||||||||||||  || || || |||||||||||||||||||||    
T  26325001 tcaagatcttcattttcttcatgcaaattcaattttgcacacctatataaaata 26324948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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