View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4402_low_15 (Length: 534)
Name: NF4402_low_15
Description: NF4402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4402_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 173 - 527
Target Start/End: Complemental strand, 40043221 - 40042867
Alignment:
| Q |
173 |
gtctaaagatattatctatattctttcatgtgtcttgttacccctgtttgctctgttctctttcaatttcttgaggcacaagcaacaaaataacaaagac |
272 |
Q |
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| T |
40043221 |
gtctaaagatattatctatattctttcatgtgttttgtttcccctgtttgctctgttctctttcaatttcttgaggcacaagcaacaaaataacaaagac |
40043122 |
T |
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| Q |
273 |
aaaagaaagcttccaccaggtgaaatgggatttccattgataggagagaccatggaattcttcaatgctcaaaggagaaacaaattgtatgaagattttg |
372 |
Q |
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| T |
40043121 |
aaaagaaagcttccaccaggtgaaatgggatttccattgataggagagaccatggaattcttcaatgctcaaaggagaaacaaattgtatgaagattttg |
40043022 |
T |
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| Q |
373 |
ttcatcctcgaatcacgaaacacggaaagatcttcaaaacaaggatcatagggtcaccaactgtgatagtaaatggagctgaggcaaataagtttatttt |
472 |
Q |
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| T |
40043021 |
ttcatcctcgaatcacgaaacacggaaagatcttcaaaacaaggatcatagggtcaccaactgtgatagtaaatggagctgaggcaaataagtttatttt |
40042922 |
T |
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| Q |
473 |
gtccaatgagttcaagctggtaaaaagctcttggccttcttcctcagttcatctc |
527 |
Q |
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| T |
40042921 |
gtccaatgagttcaagctggtaaaaagctcttggccttcttcctcagttcatctc |
40042867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 7 - 106
Target Start/End: Complemental strand, 40043387 - 40043288
Alignment:
| Q |
7 |
gttataaattataatattattcaagtcaacttgacatcattcattttcttccacagatcaaaggaatcctataaatatgtgaaccaacatactagaacct |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
40043387 |
gttataaattataatattattcaagtcaacttgacatcattcattttcttccacagatcaaaggaatcctataaatatgtgaaccaacatgctagaacct |
40043288 |
T |
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