View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4402_low_16 (Length: 533)
Name: NF4402_low_16
Description: NF4402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4402_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 495; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 20 - 526
Target Start/End: Original strand, 34658214 - 34658720
Alignment:
| Q |
20 |
ataaaaacatcagcaagtccatgaaaacaatattgaggtaccaaccaaaatacacttattggaataattgcttttggatcatccaataagttatacttag |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34658214 |
ataaaaacatcagcaagtccatgaaaacaatattgaggtaccaaccaaaatacacttattggaataattgcttttggatcatccaataagttatacttag |
34658313 |
T |
|
| Q |
120 |
cagcaacttcttttcttttgatttcaactggtgctgagattaatgtggctataatgttgattataaatccaattcccattctttgtatgcacgtgattcc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34658314 |
cagcaacttcttttcttttgatttcaactggtgctgagattaatgtggctataatgttgattataaatccaattcccattctttgtatgcacgtgattcc |
34658413 |
T |
|
| Q |
220 |
aaccggattatttgtgaatttacggacgattgggacgaatacgcgttcataaagaattactcctgccatcatggttacaacactgaaaactgacatgttg |
319 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34658414 |
aaccggattatttgtgaatttacggacgattgggatgaatacgcgttcataaagaattactcctgccatcatggttacaacactgaaaactgacatgttg |
34658513 |
T |
|
| Q |
320 |
gctggtgaaatttgaaatgtgggagagaggtgacggtccattgttcgagcttgttcgatgacgaaactaggaaggtgtgctgacgcagctataagtaaaa |
419 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
34658514 |
gctggtgaaatttgaaatgtgtgagagaggtgacggtccattgttcgagcttgttcgatgacgaaactaggaaggtgtgctgaggcagctataagtaaaa |
34658613 |
T |
|
| Q |
420 |
ttcctgatgctgaaattggaaggattctgatgatggattttaactcctcaactctatggacagtggctaatttccaaaagtttgatggtgcatttggttc |
519 |
Q |
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| T |
34658614 |
ttcctgatgctgaaattggaaggattctgatgatggattttaactcctcaactctatggacagtggctaatttccaaaagtttgatggtgcatttggttc |
34658713 |
T |
|
| Q |
520 |
tgtgctc |
526 |
Q |
| |
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||||||| |
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| T |
34658714 |
tgtgctc |
34658720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 23 - 503
Target Start/End: Original strand, 34664890 - 34665370
Alignment:
| Q |
23 |
aaaacatcagcaagtccatgaaaacaatattgaggtaccaaccaaaatacacttattggaataattgcttttggatcatccaataagttatacttagcag |
122 |
Q |
| |
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||||| ||||| | |||||| ||| |||| ||||||||||||||||| |||||||| || ||||||||||||||| ||| ||||||| || || | || |
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| T |
34664890 |
aaaacttcagccactccatgcaaaaaatactgaggtaccaaccaaaacacacttatagggataattgcttttggactatctaataagtggtatttggaag |
34664989 |
T |
|
| Q |
123 |
caacttcttttcttttgatttcaactggtgctgagattaatgtggctataatgttgattataaatccaattcccattctttgtatgcacgtgattccaac |
222 |
Q |
| |
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|||||| ||||||||||||||| || |||||| | || |||||||||||||| || | ||| || |||||||||||||| | || ||||||||| | |
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| T |
34664990 |
caactttttttcttttgatttccaccaatgctgaaactatagtggctataatgttaatcacaaagcctattcccattctttgcaaacatgtgattccagc |
34665089 |
T |
|
| Q |
223 |
cggattatttgtgaatttacggacgattgggacgaatacgcgttcataaagaattactcctgccatcatggttacaacactgaaaactgacatgttggct |
322 |
Q |
| |
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||||| ||||||||| |||||| || ||| ||||||| |||||| || ||||| || |||| ||||||||||| || ||||||| || ||| |||| |
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| T |
34665090 |
aggattctttgtgaatctacggatgaatggaacgaataagcgttcgtatagaataacacctgtcatcatggttagcacgctgaaaattgccatactggcc |
34665189 |
T |
|
| Q |
323 |
ggtgaaatttgaaatgtgggagagaggtgacggtccattgttcgagcttgttcgatgacgaaactaggaaggtgtgctgacgcagctataagtaaaattc |
422 |
Q |
| |
|
|||||||||| |||||| ||||||||||||| |||||||| ||||||||| | || || |||||| | | || ||| |||| ||| |||| ||||| |
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|
| T |
34665190 |
ggtgaaatttcgaatgtgtgagagaggtgacgatccattgtacgagcttgtacaatcacaaaactatgttgagatgatgatgcagttatgagtagaattc |
34665289 |
T |
|
| Q |
423 |
ctgatgctgaaattggaaggattctgatgatggattttaactcctcaactctatggacagtggctaatttccaaaagtttg |
503 |
Q |
| |
|
||||||| |||||||||| ||||| | | | |||||||||| ||||||||||||||||||||||| ||||| ||||||| |
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|
| T |
34665290 |
ctgatgcccaaattggaagcattctaaccaggcattttaactcttcaactctatggacagtggctaagttccataagtttg |
34665370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 23 - 515
Target Start/End: Original strand, 34645190 - 34645682
Alignment:
| Q |
23 |
aaaacatcagcaagtccatgaaaacaatattgaggtaccaaccaaaatacacttattggaataattgcttttggatcatccaataagttatacttagcag |
122 |
Q |
| |
|
||||| ||||| | |||||||| ||||||||||||||| |||||||||||||| | || || ||||||||||||||||||||||||||| |||| |||| |
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| T |
34645190 |
aaaacttcagccactccatgaagacaatattgaggtactaaccaaaatacactaaaagggattattgcttttggatcatccaataagttaaactttgcag |
34645289 |
T |
|
| Q |
123 |
caacttcttttcttttgatttcaactggtgctgagattaatgtggctataatgttgattataaatccaattcccattctttgtatgcacgtgattccaac |
222 |
Q |
| |
|
||||| ||||||||| |||| ||| ||||||| | || || ||||||||||| | | ||| || | |||||||||||||| || ||||||||| | |
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|
| T |
34645290 |
caactgtttttcttttcgtttccactagtgctgaaactatagtagctataatgttaaccacaaaccctactcccattctttgtaaacatgtgattccagc |
34645389 |
T |
|
| Q |
223 |
cggattatttgtgaatttacggacgattgggacgaatacgcgttcataaagaattactcctgccatcatggttacaacactgaaaactgacatgttggct |
322 |
Q |
| |
|
||||| ||||||||| ||||| ||| ||| ||||| | ||||||||| || || |||||| ||||||||||| |||| |||| |||||| |||||| |
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| T |
34645390 |
aggattctttgtgaatctacgggcgaatggaacgaaaaagcgttcatatagcataactcctatcatcatggttaggacaccaaaaattgacatattggct |
34645489 |
T |
|
| Q |
323 |
ggtgaaatttgaaatgtgggagagaggtgacggtccattgttcgagcttgttcgatgacgaaactaggaaggtgtgctgacgcagctataagtaaaattc |
422 |
Q |
| |
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|||| |||||| |||| ||| ||||||||||||||| | |||||||||| ||||| |||||| | |||| ||| | ||| || ||||||| |
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| T |
34645490 |
ggtgcaatttggaatgaatgagtgaggtgacggtccatcgaacgagcttgttgaatgacaaaactacctaaatgtgatgaagacattatgagcaaaattc |
34645589 |
T |
|
| Q |
423 |
ctgatgctgaaattggaaggattctgatgatggattttaactcctcaactctatggacagtggctaatttccaaaagtttgatggtgcatttg |
515 |
Q |
| |
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|||| || |||||||||| ||||||||||| | ||| | ||||||||||||||||||||| |||| ||||||| ||||| ||||||||||| |
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| T |
34645590 |
ctgaagcccaaattggaagcattctgatgatagctttcagttcctcaactctatggacagtgactaaattccaaaggtttggtggtgcatttg |
34645682 |
T |
|
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