View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4402_low_18 (Length: 488)
Name: NF4402_low_18
Description: NF4402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4402_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 20 - 473
Target Start/End: Complemental strand, 45523729 - 45523276
Alignment:
| Q |
20 |
accctgtatgttgcatggcaactccaaccatctctggggccaaggagatgctaaactatctggatgctaaatctaaacctgggttcactgctcggaaagt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45523729 |
accctgtatgttgcatggcaactccaaccatctctggggccaaggagatgctaaactatctggatgctaaatctaaacctgggttcactgctcggaaagt |
45523630 |
T |
|
| Q |
120 |
tatattgaccgatgtaagagaagaagcagttgtttatatcaactgtgttccctttgtccacagggagttaaacaaacctgttgatacactcaaacacgtc |
219 |
Q |
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| T |
45523629 |
tatattgaccgatgtaagagaagaagcagttgtttatatcaactgtgttccctttgtccacagggagttaaacaaacctgttgatacactcaaacacgtc |
45523530 |
T |
|
| Q |
220 |
ggaatcaccggtcctgtggtgagtcatcttgtacaatagtttgtctattggaacatattacgtaagtattgtgttgcacaactcatggtaactataattc |
319 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45523529 |
ggaatcaccggtcctgtggtgagccatcttgtacaatagtttgtctattggaacatattacgtaagtattgtgttgcacaactcatggtaactataattc |
45523430 |
T |
|
| Q |
320 |
aggttgaacacatggaagcacggctgaaagaagacacactggctgagattagacagtctggtgggcgaatgctactacaccgtgaagaatatgatccctc |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45523429 |
aggttgaacacatggaagcacggctgaaagaagacacactggctgagattagacagtctggtgggcgaatgctactacaccgtgaagaatatgatccctc |
45523330 |
T |
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| Q |
420 |
aacaaatcagtctactgtggttggatactgggaaaacattctggcagatgatgt |
473 |
Q |
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| T |
45523329 |
aacaaatcagtctactgtggttggatactgggaaaacattctggcagatgatgt |
45523276 |
T |
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Target: chr1 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 33 - 473
Target Start/End: Original strand, 38079281 - 38079722
Alignment:
| Q |
33 |
catggcaactccaaccatctctggggccaaggagatgctaaactatctggatgctaaatctaaacctg--ggttca-ctgctcggaaagttatattgacc |
129 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||| | | ||| |||||| ||||| || ||||| |
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| T |
38079281 |
catggcaactccaaccatctctggggccaaggagatgctaaaatatctgggtgctaatcctaaagcaaaagcctcagctgctccaaaagtaattttgact |
38079380 |
T |
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| Q |
130 |
gatgtaagagaagaagcagttgtttatatcaactgtgttccctttgtccacagggagttaaacaaacctgttgatacactcaaacacgtcggaatcaccg |
229 |
Q |
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||| | ||||| ||||||||||| || ||||| || ||||||||||| ||||||||||||||||| |||||| ||||| || || |||||||| | |
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| T |
38079381 |
gatctgagagaggaagcagttgtctacatcaagggtactccctttgtcctgagggagttaaacaaaccctatgatacgctcaagcatgtgggaatcactg |
38079480 |
T |
|
| Q |
230 |
gtcctgtggtgagtcatcttgtacaatagtttgtctattggaacatattacgtaagtattgtgttgcacaactcatggtaactataattcaggttgaaca |
329 |
Q |
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||||||||||| |||||||||||| || | | |||| ||||| | || || || |||| |||||| |||| |||| ||| ||||| ||||| |
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| T |
38079481 |
gtcctgtggtgtgtcatcttgtactattatgtatctacca-aacatgtcacaaaa-tacattgttatacaactaatggcaactgcaatgcaggtggaaca |
38079578 |
T |
|
| Q |
330 |
catggaagcacggctgaaagaagacacactggctgagattagacagtctggtgggcgaatgctactacaccgtgaagaatatgatccctcaacaaatcag |
429 |
Q |
| |
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|||||||||| || |||||||||| | | | ||||| ||||||||||||||||||| |||| || ||||||||||||||| | || |||||||| || |
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| T |
38079579 |
catggaagcaaggttgaaagaagatataatagctgaaattagacagtctggtgggctgatgcctcttcaccgtgaagaatataacccttcaacaaaccaa |
38079678 |
T |
|
| Q |
430 |
tctactgtggttggatactgggaaaacattctggcagatgatgt |
473 |
Q |
| |
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|||| ||| || |||||||||||||||||| ||||||| ||||| |
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| T |
38079679 |
tctaatgttgtcggatactgggaaaacattttggcagaagatgt |
38079722 |
T |
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