View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4402_low_19 (Length: 486)
Name: NF4402_low_19
Description: NF4402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4402_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 9 - 472
Target Start/End: Complemental strand, 39481592 - 39481127
Alignment:
| Q |
9 |
gacatcatcaaacgcttagctagttcacatttgaattcttcctcaacaccttcaaatacccctccaattccaccacaaaatcatgcaacc-tacaacaca |
107 |
Q |
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| T |
39481592 |
gacatcaacaaacgcttacctagttcacatttgaattcttcctcaacaccttcaaatacccctccaattccaccacaaaatcatgcaaccctacaacaca |
39481493 |
T |
|
| Q |
108 |
ttcttctattactacaacaacaaaaacc-aatggaatccaaatttcaactctttttcctcacccttttcctcctcattctcaccatccatgcacagactc |
206 |
Q |
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| T |
39481492 |
ttcttctactactacaacaacaaaaacccaatggaatccaaatttcaactctttttcctcacccttttcctcctcattctcaacatccatgcacagactc |
39481393 |
T |
|
| Q |
207 |
ttggaacttatattgttcaattacaccctcatggcacaaccaagtctttgttcacctccaatcttgaatggcacctttcatttatacaacaaaccatttc |
306 |
Q |
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| T |
39481392 |
ttggaacttatattgttcaattacaccctcatggcacaaccaagtctttgttcacctccaatcttgaatggcacctttcatttatacaacaaaccatttc |
39481293 |
T |
|
| Q |
307 |
atctgatgaagacccttcttctcgccttctctactcttaccgttccgcaatggacggtttcgcagctcagttaactgagtatgagctcgagtacctacaa |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39481292 |
atctgatgaagacccttcttctcgccttctctactcttaccgttccgcaatggacggtttcgcagctcagttaactgagtatgagctcgagtacctacaa |
39481193 |
T |
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| Q |
407 |
aagaatcctgatgttatctcaattaggcctgataggctactccaaattcaaaccacatattcttac |
472 |
Q |
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| T |
39481192 |
aagaatcctgatgttatctcaattaggcctgataggctactccaaattcaaaccacatattcttac |
39481127 |
T |
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