View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4402_low_22 (Length: 473)
Name: NF4402_low_22
Description: NF4402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4402_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 10 - 458
Target Start/End: Complemental strand, 4396942 - 4396494
Alignment:
| Q |
10 |
catcatcataaccaattgctacacgtggaaacccaagaatagattgcatgacggtagcaggcgagtcagaatcttcatcgctttcgctgttctcagaccc |
109 |
Q |
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| T |
4396942 |
catcatcataaccaattgctacacgtggaaacccaagaatagattgcatgacggtagcaggtgagtcagaatcttcatcgctttcgctgttctcagaccc |
4396843 |
T |
|
| Q |
110 |
gcaggaatcagcatgtctattccacaaacgatcaccctttgtctcagcatttacaacaccgatcttaggcagtgtaacagccattttccagattgcgacg |
209 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
4396842 |
gcaggaatcaacatgtctattccacaaacgatcaccctttgtctcagcatttacaacaccgatcttaggcagtgtaacagccattttccagattgcgatg |
4396743 |
T |
|
| Q |
210 |
ccatctgactctagcactgtctataaacacataataaatatagttaagtcctgaaaaaactaaatggcagcaacaataattaaacaaaaaatgaagggga |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4396742 |
ccatctgactctagcactgtctataaacacataataaatatagttaagtcctgaaaaaactaaatggcagcaacaataactaaacaaaaaatgaagggga |
4396643 |
T |
|
| Q |
310 |
cctgcaatatggccctgttccaatgatggacctcatgcactgactggtataatggtgcacccattataccagctctcatttacactgtatgttaccagca |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4396642 |
cctgcaatatggccctgttccaatgatggacctcatgcactgactggtataatggtgcacccattataccagctctcatttacactgtttgttaccagca |
4396543 |
T |
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| Q |
410 |
ataatattaactttttcttcatagcaacaaaaaactgaactaacatact |
458 |
Q |
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| T |
4396542 |
ataatattaactttttcttcatagcaacaaaaaactgaactaacatact |
4396494 |
T |
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