View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4402_low_24 (Length: 471)
Name: NF4402_low_24
Description: NF4402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4402_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 18 - 467
Target Start/End: Complemental strand, 47111155 - 47110706
Alignment:
| Q |
18 |
gttgcaaatgggatagttgtgaggacaacaacttgagtgatctttacagcagactgcagcctcaagaggacaacatccccatgaaaagcaaagttttcca |
117 |
Q |
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| T |
47111155 |
gttgcaaatgggatagttgtgaggacaacaacttgagtgatctttacagcagactgcagcctcaagaggacaacatccccatgaaaagcaaagttttcca |
47111056 |
T |
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| Q |
118 |
attccaaatacacaacaacaagtagtgcttgaagcgcaactgtgatatctactacaaacgtttggtgggttcacaggtgaaggaggagatggtcctggat |
217 |
Q |
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| T |
47111055 |
attccaaatacacaacaacaagtagtgcttgaagcgcaactgtgatatctactacaaacgtttggtgggttcacaggtgaaggaggagatggtcctggat |
47110956 |
T |
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| Q |
218 |
ttgggggattttggcccttctttatgggataggaagactgcattgcgattccacatttgcctgccacgcttgctgctagattacgttccattcttacata |
317 |
Q |
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| T |
47110955 |
ttgggggattttggcccttctttatgggataggaagactgcattacgattccacatttgcctgccacgcttgctgctagattacgttccattcttacata |
47110856 |
T |
|
| Q |
318 |
gcctgattctccccagctcttaccccatgaatttcttactatccaataatcgactccattttctgttccatacccaacagcggtaacaccatggtctaat |
417 |
Q |
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| T |
47110855 |
gcctgattctccccagctcttaccccatgaatttcttactatccaataatcgactccattttctgttccatacccaacagcggtaacaccatggtctaat |
47110756 |
T |
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| Q |
418 |
gctgtcccacattttcctgtgaatataccctgcaaatattgtgataagta |
467 |
Q |
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| T |
47110755 |
gctgtcccacattttcctgtgaatataccctgcaaatattgtgataagta |
47110706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 324 - 429
Target Start/End: Original strand, 5547495 - 5547600
Alignment:
| Q |
324 |
ttctccccagctcttaccccatgaatttcttactatccaataatcgactccattttctgttccatacccaacagcggtaacaccatggtctaatgctgtc |
423 |
Q |
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|||||||||||| ||||||||||||||| || ||||||||||| || |||||||| || || |||||||| | |||||||||||||| |||||| |
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| T |
5547495 |
ttctccccagctaccaccccatgaatttctcacaatccaataatctttaccgttttctgtaccgtatccaacagctgcaacaccatggtctagtgctgtt |
5547594 |
T |
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| Q |
424 |
ccacat |
429 |
Q |
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|||||| |
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| T |
5547595 |
ccacat |
5547600 |
T |
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