View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4402_low_26 (Length: 457)
Name: NF4402_low_26
Description: NF4402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4402_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Complemental strand, 14528042 - 14527597
Alignment:
| Q |
1 |
tctttgctaacttttctgcatcatttgatccaggcaaccaggacgaccatttggatcagtaaagtttctcaatgtagttgtgttataactgctaacgatt |
100 |
Q |
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| T |
14528042 |
tctttgctaacttttctgcatcatttgatcctggcaaccaggacgaccatttggatcagtaaagtttctcaatgtagttgtgttataactgctaacgatt |
14527943 |
T |
|
| Q |
101 |
ccacaatttgtttgcaagataagttgtatcactttgaaaagaaaaaacagaatttcttactatgatgatataaatggtgtgatattctaggtttgctatt |
200 |
Q |
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| T |
14527942 |
ccacaatttgtttgcaagataaattgtagcactttgaaaagaaaaaacagaatttcttactatgatgatataaatggtgtgatattctaggtttgctatt |
14527843 |
T |
|
| Q |
201 |
attattaacaaatatagagataagctattaaatcttatacctcttcttttcttttgaatgtatctctgtttccagatataagctccaaaagttacggcaa |
300 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14527842 |
attattaacaaata--gagataagctattaaatcttatacctcttcttttcttttgaatgtatctctgtttccagatataagctccaaaagttacggcaa |
14527745 |
T |
|
| Q |
301 |
ccaccacaacgatcaccgaactaactactgcaacgactatcactactacattacctgtacaagtcaacaaattggattcatactcaagatttatcactac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14527744 |
ccaccacaacgatcaccgaactaactactgcaacgactatcactactacattacctgtacaagtcaacaaattggattcatactcaagatttatcactac |
14527645 |
T |
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| Q |
401 |
taggtttgttaatttttctcaatgcatgaacctacatcctagaataat |
448 |
Q |
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| T |
14527644 |
taggtttgttaatttttctcaatgcatgaagctacatcctagcataat |
14527597 |
T |
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