View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4402_low_27 (Length: 457)
Name: NF4402_low_27
Description: NF4402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4402_low_27 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 19 - 457
Target Start/End: Original strand, 48500196 - 48500634
Alignment:
| Q |
19 |
aaactttccccctccttttgtggttgattaaatttgaaaggaggtgtttcatataattattcacattcagggtaattttccatgaattagaggcaaatca |
118 |
Q |
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| T |
48500196 |
aaactttccccctccttttgtggttgatttaatttgaaaggaggtgtttcatataattattcacattcagggtaattttccatgaattagaggcaaatca |
48500295 |
T |
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| Q |
119 |
acttcatcacaccactcaatacatctagtttcaaaatgactcccttttgcttggtccggcaagtaactaacccaaaattctccccctatcctccacttca |
218 |
Q |
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| T |
48500296 |
acttcatcacaccactcaatacatctagtttcaaaatgactcccttttgcttggtccggcaagtaactaacccaaaattctccccctatcctccacttca |
48500395 |
T |
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| Q |
219 |
acacactcccttccatctctttacttaacctccaccctacttcttctccgtattcatcccctgctattacaaccgacccgctcttactaaacggtctatt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48500396 |
acacactcccttccatctctttacttaacctccaccctacttcttctccgtattcatcccctgctattacaaccgacccgctcttactaaacggtctatt |
48500495 |
T |
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| Q |
319 |
tgccccgacatatcgccccctcaacccatgaatcgggtcatcacctgtgggcttccacgagcccacttcttggcccgtcatattatcatgcaaaacaaca |
418 |
Q |
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| T |
48500496 |
tgccccgacatatcgccccctcaacccatgaatcgggtcatcacctgtgggcttccacgagcccacttcttggcccgtcatattatcatgcaaaacaaca |
48500595 |
T |
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| Q |
419 |
tcaaatatagctgcgttcccctccgcgtcttgatccatt |
457 |
Q |
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| T |
48500596 |
tcaaatatagctgcgttcccctccgcgtcttgatccatt |
48500634 |
T |
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